Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0948 and Dsui_0949 are separated by 40 nucleotides Dsui_0949 and Dsui_0950 overlap by 4 nucleotides Dsui_0950 and Dsui_0951 are separated by 169 nucleotides Dsui_0951 and Dsui_0952 are separated by 126 nucleotides Dsui_0952 and Dsui_0953 are separated by 94 nucleotides
Dsui_0948: Dsui_0948 - hypothetical protein, at 975,431 to 975,850
_0948
Dsui_0949: Dsui_0949 - hypothetical protein, at 975,891 to 976,106
_0949
Dsui_0950: Dsui_0950 - acyl dehydratase, at 976,103 to 976,603
_0950
Dsui_0951: Dsui_0951 - nucleoside-diphosphate-sugar epimerase, at 976,773 to 977,732
_0951
Dsui_0952: Dsui_0952 - chemotaxis protein, at 977,859 to 978,482
_0952
Dsui_0953: Dsui_0953 - ADP-ribosyl-(dinitrogen reductase) hydrolase, at 978,577 to 979,500
_0953
Position (kb)
976
977
978 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 975.918 kb on - strand, within Dsui_0949 at 976.147 kb on + strand at 976.398 kb on + strand, within Dsui_0950 at 976.530 kb on - strand, within Dsui_0950 at 976.642 kb on - strand at 976.700 kb on + strand at 976.700 kb on + strand at 976.893 kb on + strand, within Dsui_0951 at 976.893 kb on + strand, within Dsui_0951 at 977.020 kb on - strand, within Dsui_0951 at 977.048 kb on + strand, within Dsui_0951 at 977.399 kb on - strand, within Dsui_0951 at 977.430 kb on + strand, within Dsui_0951 at 977.432 kb on - strand, within Dsui_0951 at 977.568 kb on - strand, within Dsui_0951 at 977.590 kb on + strand, within Dsui_0951 at 977.590 kb on + strand, within Dsui_0951 at 977.598 kb on - strand, within Dsui_0951 at 977.632 kb on - strand, within Dsui_0951 at 977.666 kb on + strand at 977.666 kb on + strand at 977.672 kb on + strand at 977.676 kb on + strand at 977.684 kb on - strand at 977.695 kb on + strand at 977.752 kb on + strand at 977.850 kb on - strand at 977.865 kb on - strand at 977.889 kb on - strand at 977.942 kb on - strand, within Dsui_0952 at 977.962 kb on + strand, within Dsui_0952 at 978.105 kb on + strand, within Dsui_0952 at 978.143 kb on + strand at 978.143 kb on + strand, within Dsui_0952 at 978.151 kb on - strand, within Dsui_0952 at 978.156 kb on - strand, within Dsui_0952 at 978.165 kb on + strand, within Dsui_0952 at 978.172 kb on - strand, within Dsui_0952 at 978.316 kb on + strand at 978.316 kb on + strand at 978.316 kb on + strand, within Dsui_0952 at 978.349 kb on - strand, within Dsui_0952 at 978.419 kb on + strand, within Dsui_0952 at 978.419 kb on + strand at 978.427 kb on - strand at 978.463 kb on - strand at 978.499 kb on - strand at 978.728 kb on - strand, within Dsui_0953
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 975,918 - Dsui_0949 0.12 +0.3 976,147 + +0.5 976,398 + Dsui_0950 0.59 -3.5 976,530 - Dsui_0950 0.85 -0.0 976,642 - +0.5 976,700 + +0.5 976,700 + +0.5 976,893 + Dsui_0951 0.12 -0.9 976,893 + Dsui_0951 0.12 -0.6 977,020 - Dsui_0951 0.26 +0.5 977,048 + Dsui_0951 0.29 -0.3 977,399 - Dsui_0951 0.65 +0.5 977,430 + Dsui_0951 0.68 -1.0 977,432 - Dsui_0951 0.69 -1.1 977,568 - Dsui_0951 0.83 -1.8 977,590 + Dsui_0951 0.85 -0.7 977,590 + Dsui_0951 0.85 -0.6 977,598 - Dsui_0951 0.86 -2.5 977,632 - Dsui_0951 0.89 +0.5 977,666 + -0.2 977,666 + +0.3 977,672 + -2.1 977,676 + -1.7 977,684 - +0.5 977,695 + -0.2 977,752 + -0.7 977,850 - -1.1 977,865 - -0.5 977,889 - -0.5 977,942 - Dsui_0952 0.13 -2.2 977,962 + Dsui_0952 0.17 -1.1 978,105 + Dsui_0952 0.39 -1.6 978,143 + -0.5 978,143 + Dsui_0952 0.46 +0.5 978,151 - Dsui_0952 0.47 -2.3 978,156 - Dsui_0952 0.48 -1.8 978,165 + Dsui_0952 0.49 -0.5 978,172 - Dsui_0952 0.50 -0.5 978,316 + +0.5 978,316 + +0.5 978,316 + Dsui_0952 0.73 +0.6 978,349 - Dsui_0952 0.79 +0.5 978,419 + Dsui_0952 0.90 -2.1 978,419 + +0.5 978,427 - -1.5 978,463 - +0.5 978,499 - +0.5 978,728 - Dsui_0953 0.16 -1.8
Or see this region's nucleotide sequence