Strain Fitness in Dechlorosoma suillum PS around Dsui_0900

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0899 and Dsui_0900 are separated by 27 nucleotidesDsui_0900 and Dsui_0901 are separated by 23 nucleotidesDsui_0901 and Dsui_0902 are separated by 20 nucleotidesDsui_0902 and Dsui_0903 overlap by 4 nucleotides Dsui_0899: Dsui_0899 - D-alanyl-D-alanine carboxypeptidase, at 917,330 to 918,499 _0899 Dsui_0900: Dsui_0900 - branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 918,527 to 919,390 _0900 Dsui_0901: Dsui_0901 - hypothetical protein, at 919,414 to 919,713 _0901 Dsui_0902: Dsui_0902 - lipoate-protein ligase B, at 919,734 to 920,354 _0902 Dsui_0903: Dsui_0903 - lipoate synthase, at 920,351 to 921,298 _0903 Position (kb) 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1at 917.550 kb on - strandat 917.556 kb on + strand, within Dsui_0899at 917.562 kb on + strand, within Dsui_0899at 917.566 kb on + strand, within Dsui_0899at 917.602 kb on + strand, within Dsui_0899at 917.616 kb on - strand, within Dsui_0899at 917.731 kb on - strand, within Dsui_0899at 917.752 kb on - strand, within Dsui_0899at 917.805 kb on + strand, within Dsui_0899at 917.932 kb on - strand, within Dsui_0899at 917.935 kb on + strand, within Dsui_0899at 917.967 kb on + strand, within Dsui_0899at 917.977 kb on + strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.985 kb on - strand, within Dsui_0899at 917.995 kb on + strand, within Dsui_0899at 918.003 kb on - strand, within Dsui_0899at 918.126 kb on - strand, within Dsui_0899at 918.143 kb on - strand, within Dsui_0899at 918.144 kb on + strand, within Dsui_0899at 918.144 kb on + strand, within Dsui_0899at 918.198 kb on - strand, within Dsui_0899at 918.198 kb on - strand, within Dsui_0899at 918.202 kb on + strand, within Dsui_0899at 918.219 kb on + strand, within Dsui_0899at 918.227 kb on - strand, within Dsui_0899at 918.229 kb on + strand, within Dsui_0899at 918.237 kb on - strand, within Dsui_0899at 918.237 kb on - strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.241 kb on + strand, within Dsui_0899at 918.249 kb on - strand, within Dsui_0899at 918.249 kb on - strand, within Dsui_0899at 918.290 kb on + strand, within Dsui_0899at 918.297 kb on - strand, within Dsui_0899at 918.298 kb on - strand, within Dsui_0899at 918.303 kb on - strand, within Dsui_0899at 918.357 kb on + strand, within Dsui_0899at 918.357 kb on + strand, within Dsui_0899at 918.403 kb on + strandat 918.463 kb on - strandat 918.477 kb on + strandat 918.477 kb on + strandat 918.485 kb on - strandat 918.514 kb on - strandat 918.550 kb on + strandat 918.696 kb on + strand, within Dsui_0900at 918.696 kb on + strand, within Dsui_0900at 918.714 kb on - strand, within Dsui_0900at 918.782 kb on + strand, within Dsui_0900at 918.870 kb on + strand, within Dsui_0900at 918.977 kb on - strand, within Dsui_0900at 919.020 kb on + strand, within Dsui_0900at 919.101 kb on - strand, within Dsui_0900at 919.119 kb on + strand, within Dsui_0900at 919.214 kb on + strand, within Dsui_0900at 919.225 kb on - strand, within Dsui_0900at 919.320 kb on + strandat 919.384 kb on + strandat 919.476 kb on + strand, within Dsui_0901at 919.618 kb on + strand, within Dsui_0901

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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917,550 - -0.5
917,556 + Dsui_0899 0.19 +0.2
917,562 + Dsui_0899 0.20 -0.0
917,566 + Dsui_0899 0.20 -0.1
917,602 + Dsui_0899 0.23 +0.1
917,616 - Dsui_0899 0.24 -3.6
917,731 - Dsui_0899 0.34 +0.5
917,752 - Dsui_0899 0.36 +0.5
917,805 + Dsui_0899 0.41 -0.0
917,932 - Dsui_0899 0.51 +0.5
917,935 + Dsui_0899 0.52 +0.5
917,967 + Dsui_0899 0.54 +0.0
917,977 + Dsui_0899 0.55 +0.1
917,985 - Dsui_0899 0.56 -1.1
917,985 - Dsui_0899 0.56 -3.0
917,985 - Dsui_0899 0.56 +0.5
917,995 + Dsui_0899 0.57 -0.6
918,003 - Dsui_0899 0.58 -0.5
918,126 - Dsui_0899 0.68 +0.5
918,143 - Dsui_0899 0.69 -1.1
918,144 + Dsui_0899 0.70 +0.1
918,144 + Dsui_0899 0.70 +0.1
918,198 - Dsui_0899 0.74 -0.5
918,198 - Dsui_0899 0.74 -2.1
918,202 + Dsui_0899 0.75 -0.2
918,219 + Dsui_0899 0.76 +0.5
918,227 - Dsui_0899 0.77 +0.5
918,229 + Dsui_0899 0.77 +0.0
918,237 - Dsui_0899 0.78 +0.5
918,237 - Dsui_0899 0.78 -0.5
918,241 + Dsui_0899 0.78 +0.4
918,241 + Dsui_0899 0.78 -0.0
918,241 + Dsui_0899 0.78 -0.2
918,241 + Dsui_0899 0.78 -0.5
918,241 + Dsui_0899 0.78 -0.2
918,241 + Dsui_0899 0.78 +0.1
918,241 + Dsui_0899 0.78 +0.1
918,249 - Dsui_0899 0.79 +0.5
918,249 - Dsui_0899 0.79 -0.5
918,290 + Dsui_0899 0.82 +0.1
918,297 - Dsui_0899 0.83 -2.4
918,298 - Dsui_0899 0.83 -0.5
918,303 - Dsui_0899 0.83 -1.5
918,357 + Dsui_0899 0.88 +0.2
918,357 + Dsui_0899 0.88 +0.2
918,403 + -0.1
918,463 - +0.5
918,477 + -0.0
918,477 + -0.0
918,485 - -1.4
918,514 - +0.5
918,550 + -0.1
918,696 + Dsui_0900 0.20 -0.0
918,696 + Dsui_0900 0.20 +0.2
918,714 - Dsui_0900 0.22 -1.9
918,782 + Dsui_0900 0.30 +0.3
918,870 + Dsui_0900 0.40 -0.1
918,977 - Dsui_0900 0.52 -0.5
919,020 + Dsui_0900 0.57 +0.4
919,101 - Dsui_0900 0.66 -1.1
919,119 + Dsui_0900 0.69 -0.8
919,214 + Dsui_0900 0.80 +0.5
919,225 - Dsui_0900 0.81 -0.5
919,320 + -0.1
919,384 + -0.1
919,476 + Dsui_0901 0.21 +0.2
919,618 + Dsui_0901 0.68 -0.8

Or see this region's nucleotide sequence