Strain Fitness in Dechlorosoma suillum PS around Dsui_0883

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0882 and Dsui_0883 are separated by 215 nucleotidesDsui_0883 and Dsui_0884 are separated by 119 nucleotides Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835 _0882 Dsui_0883: Dsui_0883 - transcriptional regulator with HTH domain and aminotransferase domain, at 896,051 to 897,478 _0883 Dsui_0884: Dsui_0884 - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit, at 897,598 to 899,055 _0884 Position (kb) 896 897 898Strain fitness (log2 ratio) -3 -2 -1 0 1at 895.051 kb on - strand, within Dsui_0882at 895.134 kb on - strand, within Dsui_0882at 895.184 kb on + strand, within Dsui_0882at 895.205 kb on - strand, within Dsui_0882at 895.244 kb on + strand, within Dsui_0882at 895.279 kb on - strand, within Dsui_0882at 895.282 kb on + strand, within Dsui_0882at 895.282 kb on + strand, within Dsui_0882at 895.282 kb on + strandat 895.852 kb on + strandat 895.950 kb on - strandat 895.954 kb on + strandat 895.955 kb on + strandat 896.037 kb on - strandat 896.040 kb on + strandat 896.050 kb on - strandat 896.050 kb on - strandat 896.050 kb on - strandat 896.075 kb on + strandat 896.132 kb on + strandat 896.224 kb on + strand, within Dsui_0883at 896.227 kb on - strand, within Dsui_0883at 896.232 kb on - strand, within Dsui_0883at 896.232 kb on - strand, within Dsui_0883at 896.251 kb on + strand, within Dsui_0883at 896.274 kb on + strand, within Dsui_0883at 896.282 kb on - strand, within Dsui_0883at 896.282 kb on - strand, within Dsui_0883at 896.339 kb on + strandat 896.451 kb on - strand, within Dsui_0883at 896.463 kb on - strand, within Dsui_0883at 896.526 kb on - strand, within Dsui_0883at 896.526 kb on - strand, within Dsui_0883at 896.559 kb on - strandat 896.559 kb on - strand, within Dsui_0883at 896.559 kb on - strand, within Dsui_0883at 896.574 kb on + strandat 896.574 kb on + strandat 896.683 kb on - strand, within Dsui_0883at 896.742 kb on - strand, within Dsui_0883at 896.771 kb on - strand, within Dsui_0883at 896.776 kb on - strand, within Dsui_0883at 896.821 kb on + strand, within Dsui_0883at 896.938 kb on + strand, within Dsui_0883at 896.946 kb on - strand, within Dsui_0883at 896.983 kb on + strand, within Dsui_0883at 896.996 kb on - strand, within Dsui_0883at 896.998 kb on + strand, within Dsui_0883at 897.001 kb on - strand, within Dsui_0883at 897.024 kb on - strand, within Dsui_0883at 897.066 kb on - strand, within Dsui_0883at 897.066 kb on - strand, within Dsui_0883at 897.108 kb on + strand, within Dsui_0883at 897.199 kb on + strand, within Dsui_0883at 897.199 kb on + strand, within Dsui_0883at 897.250 kb on + strand, within Dsui_0883at 897.307 kb on + strand, within Dsui_0883at 897.325 kb on + strand, within Dsui_0883at 897.327 kb on + strand, within Dsui_0883at 897.333 kb on - strand, within Dsui_0883at 897.350 kb on - strandat 897.405 kb on + strandat 897.464 kb on + strandat 897.568 kb on - strandat 897.582 kb on + strandat 897.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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895,051 - Dsui_0882 0.66 +0.5
895,134 - Dsui_0882 0.69 -1.1
895,184 + Dsui_0882 0.72 +0.5
895,205 - Dsui_0882 0.73 +0.5
895,244 + Dsui_0882 0.74 +0.4
895,279 - Dsui_0882 0.76 +0.5
895,282 + Dsui_0882 0.76 -2.1
895,282 + Dsui_0882 0.76 -1.8
895,282 + +0.5
895,852 + +0.5
895,950 - -0.5
895,954 + -1.1
895,955 + +0.5
896,037 - -1.1
896,040 + +0.5
896,050 - -2.5
896,050 - +0.5
896,050 - +0.5
896,075 + -2.3
896,132 + -0.8
896,224 + Dsui_0883 0.12 -0.5
896,227 - Dsui_0883 0.12 -1.8
896,232 - Dsui_0883 0.13 -3.2
896,232 - Dsui_0883 0.13 -1.5
896,251 + Dsui_0883 0.14 +0.5
896,274 + Dsui_0883 0.16 -2.3
896,282 - Dsui_0883 0.16 +0.5
896,282 - Dsui_0883 0.16 -0.5
896,339 + +0.5
896,451 - Dsui_0883 0.28 -1.1
896,463 - Dsui_0883 0.29 +0.5
896,526 - Dsui_0883 0.33 +0.1
896,526 - Dsui_0883 0.33 -0.9
896,559 - +0.5
896,559 - Dsui_0883 0.36 -1.1
896,559 - Dsui_0883 0.36 -1.1
896,574 + +0.5
896,574 + +0.5
896,683 - Dsui_0883 0.44 -1.1
896,742 - Dsui_0883 0.48 -3.2
896,771 - Dsui_0883 0.50 -3.2
896,776 - Dsui_0883 0.51 -2.7
896,821 + Dsui_0883 0.54 +0.5
896,938 + Dsui_0883 0.62 -0.5
896,946 - Dsui_0883 0.63 +0.5
896,983 + Dsui_0883 0.65 -1.5
896,996 - Dsui_0883 0.66 -1.6
896,998 + Dsui_0883 0.66 -1.1
897,001 - Dsui_0883 0.67 -0.7
897,024 - Dsui_0883 0.68 +0.8
897,066 - Dsui_0883 0.71 +0.5
897,066 - Dsui_0883 0.71 -1.4
897,108 + Dsui_0883 0.74 -0.5
897,199 + Dsui_0883 0.80 -0.5
897,199 + Dsui_0883 0.80 -0.5
897,250 + Dsui_0883 0.84 -1.1
897,307 + Dsui_0883 0.88 -0.5
897,325 + Dsui_0883 0.89 -1.5
897,327 + Dsui_0883 0.89 +0.5
897,333 - Dsui_0883 0.90 -1.2
897,350 - -1.3
897,405 + -0.1
897,464 + -0.5
897,568 - +0.0
897,582 + -0.5
897,622 - -0.6

Or see this region's nucleotide sequence