Strain Fitness in Dechlorosoma suillum PS around Dsui_0877

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0875 and Dsui_0876 overlap by 4 nucleotidesDsui_0876 and Dsui_0877 are separated by 4 nucleotidesDsui_0877 and Dsui_0878 are separated by 322 nucleotidesDsui_0878 and Dsui_0879 are separated by 14 nucleotides Dsui_0875: Dsui_0875 - putative branched-chain amino acid permease (azaleucine resistance), at 888,437 to 889,180 _0875 Dsui_0876: Dsui_0876 - putative membrane protein, at 889,177 to 889,479 _0876 Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863 _0877 Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821 _0878 Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144 _0879 Position (kb) 889 890 891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 888.518 kb on + strand, within Dsui_0875at 888.623 kb on + strand, within Dsui_0875at 888.646 kb on - strand, within Dsui_0875at 888.666 kb on - strandat 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.725 kb on + strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.733 kb on - strand, within Dsui_0875at 888.782 kb on - strand, within Dsui_0875at 888.788 kb on - strand, within Dsui_0875at 888.793 kb on - strand, within Dsui_0875at 888.914 kb on - strand, within Dsui_0875at 889.097 kb on + strand, within Dsui_0875at 889.100 kb on - strandat 889.102 kb on + strand, within Dsui_0875at 889.120 kb on - strandat 889.120 kb on - strandat 889.156 kb on + strandat 889.158 kb on + strandat 889.158 kb on + strandat 889.164 kb on - strandat 889.352 kb on - strandat 889.393 kb on + strand, within Dsui_0876at 889.398 kb on - strand, within Dsui_0876at 889.432 kb on - strandat 889.475 kb on + strandat 889.539 kb on + strandat 889.540 kb on - strandat 889.604 kb on + strandat 889.610 kb on + strandat 889.638 kb on + strandat 889.653 kb on + strand, within Dsui_0877at 889.726 kb on + strandat 889.726 kb on + strand, within Dsui_0877at 889.734 kb on - strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.828 kb on + strand, within Dsui_0877at 889.846 kb on + strand, within Dsui_0877at 889.856 kb on + strand, within Dsui_0877at 889.864 kb on - strand, within Dsui_0877at 889.917 kb on + strand, within Dsui_0877at 889.954 kb on + strand, within Dsui_0877at 890.016 kb on - strandat 890.016 kb on - strand, within Dsui_0877at 890.098 kb on + strand, within Dsui_0877at 890.205 kb on + strandat 890.233 kb on + strandat 890.255 kb on + strand, within Dsui_0877at 890.255 kb on + strandat 890.256 kb on - strandat 890.261 kb on - strand, within Dsui_0877at 890.263 kb on + strand, within Dsui_0877at 890.263 kb on + strand, within Dsui_0877at 890.302 kb on + strandat 890.304 kb on - strandat 890.310 kb on - strand, within Dsui_0877at 890.310 kb on - strand, within Dsui_0877at 890.340 kb on + strand, within Dsui_0877at 890.349 kb on - strand, within Dsui_0877at 890.360 kb on + strand, within Dsui_0877at 890.368 kb on - strand, within Dsui_0877at 890.460 kb on - strandat 890.460 kb on - strand, within Dsui_0877at 890.466 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strand, within Dsui_0877at 890.510 kb on + strandat 890.510 kb on + strand, within Dsui_0877at 890.518 kb on - strandat 890.518 kb on - strand, within Dsui_0877at 890.518 kb on - strand, within Dsui_0877at 890.518 kb on - strand, within Dsui_0877at 890.518 kb on - strand, within Dsui_0877at 890.580 kb on - strand, within Dsui_0877at 890.643 kb on - strand, within Dsui_0877at 890.660 kb on + strandat 890.670 kb on + strand, within Dsui_0877at 890.739 kb on + strandat 890.746 kb on + strandat 890.754 kb on - strandat 890.754 kb on - strandat 890.754 kb on - strandat 890.763 kb on + strandat 890.858 kb on + strandat 890.858 kb on - strandat 890.903 kb on - strandat 890.954 kb on - strandat 890.985 kb on + strandat 891.001 kb on + strandat 891.002 kb on + strandat 891.008 kb on + strandat 891.008 kb on - strandat 891.009 kb on - strandat 891.054 kb on - strandat 891.067 kb on + strandat 891.099 kb on - strandat 891.119 kb on + strandat 891.144 kb on + strandat 891.144 kb on + strandat 891.162 kb on - strandat 891.184 kb on + strandat 891.223 kb on + strandat 891.223 kb on + strandat 891.228 kb on + strandat 891.233 kb on + strandat 891.233 kb on + strandat 891.241 kb on - strandat 891.244 kb on + strandat 891.250 kb on + strand, within Dsui_0878at 891.250 kb on + strand, within Dsui_0878at 891.250 kb on + strandat 891.250 kb on + strand, within Dsui_0878at 891.255 kb on + strand, within Dsui_0878at 891.322 kb on + strand, within Dsui_0878at 891.332 kb on + strand, within Dsui_0878at 891.332 kb on + strand, within Dsui_0878at 891.340 kb on - strand, within Dsui_0878at 891.377 kb on - strandat 891.388 kb on + strand, within Dsui_0878at 891.396 kb on - strand, within Dsui_0878at 891.396 kb on - strand, within Dsui_0878at 891.574 kb on + strand, within Dsui_0878at 891.582 kb on - strandat 891.588 kb on - strand, within Dsui_0878at 891.593 kb on - strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.624 kb on + strand, within Dsui_0878at 891.628 kb on + strand, within Dsui_0878at 891.628 kb on + strand, within Dsui_0878at 891.632 kb on - strand, within Dsui_0878at 891.632 kb on - strandat 891.632 kb on - strand, within Dsui_0878at 891.653 kb on + strand, within Dsui_0878at 891.661 kb on + strand, within Dsui_0878at 891.662 kb on - strand, within Dsui_0878at 891.769 kb on + strandat 891.787 kb on - strandat 891.803 kb on + strandat 891.806 kb on - strandat 891.815 kb on + strandat 891.816 kb on + strandat 891.818 kb on - strandat 891.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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888,518 + Dsui_0875 0.11 -0.3
888,623 + Dsui_0875 0.25 +0.0
888,646 - Dsui_0875 0.28 -1.9
888,666 - +0.5
888,725 + Dsui_0875 0.39 -1.0
888,725 + Dsui_0875 0.39 -0.5
888,725 + Dsui_0875 0.39 -0.4
888,733 - Dsui_0875 0.40 +0.5
888,733 - Dsui_0875 0.40 +0.5
888,733 - Dsui_0875 0.40 +0.5
888,782 - Dsui_0875 0.46 -0.5
888,788 - Dsui_0875 0.47 -0.5
888,793 - Dsui_0875 0.48 -2.1
888,914 - Dsui_0875 0.64 -1.1
889,097 + Dsui_0875 0.89 -1.1
889,100 - -0.5
889,102 + Dsui_0875 0.89 -0.9
889,120 - -2.5
889,120 - -0.5
889,156 + -0.7
889,158 + -1.1
889,158 + -0.7
889,164 - -1.1
889,352 - +0.5
889,393 + Dsui_0876 0.71 -1.5
889,398 - Dsui_0876 0.73 -1.1
889,432 - +0.5
889,475 + -1.7
889,539 + -1.1
889,540 - -0.5
889,604 + -2.7
889,610 + +0.5
889,638 + +0.5
889,653 + Dsui_0877 0.12 -2.2
889,726 + +0.5
889,726 + Dsui_0877 0.18 +0.5
889,734 - Dsui_0877 0.18 +0.5
889,828 + Dsui_0877 0.25 -0.5
889,828 + Dsui_0877 0.25 -1.9
889,828 + Dsui_0877 0.25 -0.5
889,846 + Dsui_0877 0.26 +0.5
889,856 + Dsui_0877 0.27 -0.5
889,864 - Dsui_0877 0.28 +0.5
889,917 + Dsui_0877 0.31 -3.2
889,954 + Dsui_0877 0.34 -0.5
890,016 - +0.5
890,016 - Dsui_0877 0.39 -1.5
890,098 + Dsui_0877 0.44 -1.1
890,205 + +0.5
890,233 + +0.5
890,255 + Dsui_0877 0.56 -0.5
890,255 + +0.5
890,256 - +0.5
890,261 - Dsui_0877 0.56 -1.1
890,263 + Dsui_0877 0.56 -0.6
890,263 + Dsui_0877 0.56 -0.6
890,302 + +0.5
890,304 - +0.5
890,310 - Dsui_0877 0.60 +0.5
890,310 - Dsui_0877 0.60 -1.4
890,340 + Dsui_0877 0.62 -1.1
890,349 - Dsui_0877 0.63 -0.5
890,360 + Dsui_0877 0.63 -1.5
890,368 - Dsui_0877 0.64 -1.1
890,460 - +0.5
890,460 - Dsui_0877 0.71 -1.1
890,466 + Dsui_0877 0.71 -2.1
890,510 + Dsui_0877 0.74 -0.5
890,510 + Dsui_0877 0.74 -1.5
890,510 + Dsui_0877 0.74 -2.5
890,510 + Dsui_0877 0.74 -1.1
890,510 + Dsui_0877 0.74 +0.5
890,510 + Dsui_0877 0.74 -1.1
890,510 + Dsui_0877 0.74 -0.5
890,510 + +0.5
890,510 + Dsui_0877 0.74 +0.5
890,518 - +0.5
890,518 - Dsui_0877 0.75 -0.5
890,518 - Dsui_0877 0.75 -0.5
890,518 - Dsui_0877 0.75 +0.5
890,518 - Dsui_0877 0.75 +0.5
890,580 - Dsui_0877 0.79 +0.5
890,643 - Dsui_0877 0.84 +0.5
890,660 + -0.5
890,670 + Dsui_0877 0.86 +0.5
890,739 + +0.5
890,746 + +0.5
890,754 - -0.5
890,754 - +0.5
890,754 - -1.1
890,763 + -0.5
890,858 + -0.5
890,858 - +0.5
890,903 - -0.5
890,954 - +0.5
890,985 + +0.5
891,001 + +0.5
891,002 + -0.5
891,008 + -1.5
891,008 - -0.5
891,009 - -1.5
891,054 - -0.5
891,067 + -0.1
891,099 - +0.5
891,119 + -1.1
891,144 + +0.5
891,144 + +0.5
891,162 - -0.5
891,184 + -0.5
891,223 + -1.1
891,223 + -1.1
891,228 + +0.5
891,233 + -1.1
891,233 + -2.1
891,241 - -0.5
891,244 + -1.1
891,250 + Dsui_0878 0.10 +0.5
891,250 + Dsui_0878 0.10 -1.1
891,250 + +0.5
891,250 + Dsui_0878 0.10 +0.5
891,255 + Dsui_0878 0.11 -1.1
891,322 + Dsui_0878 0.21 -1.1
891,332 + Dsui_0878 0.23 -1.5
891,332 + Dsui_0878 0.23 -0.5
891,340 - Dsui_0878 0.24 -2.4
891,377 - +0.5
891,388 + Dsui_0878 0.32 -0.5
891,396 - Dsui_0878 0.33 +0.5
891,396 - Dsui_0878 0.33 -1.1
891,574 + Dsui_0878 0.61 -2.1
891,582 - +0.5
891,588 - Dsui_0878 0.63 -2.9
891,593 - Dsui_0878 0.64 -1.5
891,624 + Dsui_0878 0.69 +0.5
891,624 + Dsui_0878 0.69 -1.1
891,624 + Dsui_0878 0.69 +0.5
891,624 + Dsui_0878 0.69 -1.9
891,628 + Dsui_0878 0.69 -2.4
891,628 + Dsui_0878 0.69 -2.9
891,632 - Dsui_0878 0.70 -0.5
891,632 - +0.5
891,632 - Dsui_0878 0.70 +0.5
891,653 + Dsui_0878 0.73 -0.5
891,661 + Dsui_0878 0.75 -3.9
891,662 - Dsui_0878 0.75 -1.5
891,769 + -0.5
891,787 - -0.5
891,803 + -1.1
891,806 - +0.5
891,815 + +0.5
891,816 + -0.5
891,818 - +0.5
891,847 + +0.5

Or see this region's nucleotide sequence