Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0867 and Dsui_0868 overlap by 8 nucleotides Dsui_0868 and Dsui_0869 are separated by 3 nucleotides Dsui_0869 and Dsui_0870 overlap by 4 nucleotides Dsui_0870 and Dsui_0871 are separated by 111 nucleotides Dsui_0871 and Dsui_0872 are separated by 137 nucleotides
Dsui_0867: Dsui_0867 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 883,275 to 884,651
_0867
Dsui_0868: Dsui_0868 - hypothetical protein, at 884,644 to 884,985
_0868
Dsui_0869: Dsui_0869 - hypothetical protein, at 884,989 to 885,297
_0869
Dsui_0870: Dsui_0870 - putative membrane protein, at 885,294 to 885,701
_0870
Dsui_0871: Dsui_0871 - hypothetical protein, at 885,813 to 886,133
_0871
Dsui_0872: Dsui_0872 - exodeoxyribonuclease III, at 886,271 to 887,056
_0872
Position (kb) 884
885
886 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 884.013 kb on + strand, within Dsui_0867 at 884.035 kb on - strand, within Dsui_0867 at 884.066 kb on - strand, within Dsui_0867 at 884.100 kb on - strand, within Dsui_0867 at 884.100 kb on - strand, within Dsui_0867 at 884.101 kb on - strand, within Dsui_0867 at 884.153 kb on + strand, within Dsui_0867 at 884.162 kb on - strand at 884.260 kb on + strand, within Dsui_0867 at 884.317 kb on + strand, within Dsui_0867 at 884.317 kb on + strand, within Dsui_0867 at 884.394 kb on + strand, within Dsui_0867 at 884.394 kb on + strand, within Dsui_0867 at 884.401 kb on - strand, within Dsui_0867 at 884.479 kb on + strand, within Dsui_0867 at 884.571 kb on - strand at 884.640 kb on + strand at 884.709 kb on + strand, within Dsui_0868 at 884.709 kb on + strand, within Dsui_0868 at 884.714 kb on + strand, within Dsui_0868 at 884.717 kb on - strand, within Dsui_0868 at 884.731 kb on + strand, within Dsui_0868 at 884.752 kb on - strand, within Dsui_0868 at 884.780 kb on + strand, within Dsui_0868 at 884.804 kb on - strand, within Dsui_0868 at 884.872 kb on + strand, within Dsui_0868 at 884.900 kb on + strand, within Dsui_0868 at 884.937 kb on + strand, within Dsui_0868 at 884.995 kb on - strand at 884.995 kb on - strand at 885.144 kb on + strand, within Dsui_0869 at 885.154 kb on + strand, within Dsui_0869 at 885.157 kb on - strand, within Dsui_0869 at 885.191 kb on - strand, within Dsui_0869 at 885.211 kb on + strand, within Dsui_0869 at 885.327 kb on - strand at 885.341 kb on + strand, within Dsui_0870 at 885.355 kb on + strand, within Dsui_0870 at 885.436 kb on - strand, within Dsui_0870 at 885.445 kb on + strand, within Dsui_0870 at 885.521 kb on + strand, within Dsui_0870 at 885.543 kb on + strand at 885.610 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.627 kb on + strand, within Dsui_0870 at 885.756 kb on - strand at 885.797 kb on + strand at 885.899 kb on + strand, within Dsui_0871 at 886.104 kb on - strand at 886.123 kb on - strand at 886.179 kb on + strand at 886.186 kb on + strand at 886.187 kb on - strand at 886.187 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 884,013 + Dsui_0867 0.54 -0.4 884,035 - Dsui_0867 0.55 -2.6 884,066 - Dsui_0867 0.57 +0.4 884,100 - Dsui_0867 0.60 -2.1 884,100 - Dsui_0867 0.60 +1.0 884,101 - Dsui_0867 0.60 +0.1 884,153 + Dsui_0867 0.64 -0.4 884,162 - +0.4 884,260 + Dsui_0867 0.72 -0.4 884,317 + Dsui_0867 0.76 -0.1 884,317 + Dsui_0867 0.76 -0.4 884,394 + Dsui_0867 0.81 -0.4 884,394 + Dsui_0867 0.81 -0.5 884,401 - Dsui_0867 0.82 -1.1 884,479 + Dsui_0867 0.87 -0.3 884,571 - -0.9 884,640 + -0.6 884,709 + Dsui_0868 0.19 +0.4 884,709 + Dsui_0868 0.19 -0.5 884,714 + Dsui_0868 0.20 -1.2 884,717 - Dsui_0868 0.21 -0.2 884,731 + Dsui_0868 0.25 -0.6 884,752 - Dsui_0868 0.32 -0.2 884,780 + Dsui_0868 0.40 -2.6 884,804 - Dsui_0868 0.47 +0.1 884,872 + Dsui_0868 0.67 -1.5 884,900 + Dsui_0868 0.75 -1.1 884,937 + Dsui_0868 0.86 -3.1 884,995 - -0.1 884,995 - -0.1 885,144 + Dsui_0869 0.50 -2.1 885,154 + Dsui_0869 0.53 -2.1 885,157 - Dsui_0869 0.54 -0.8 885,191 - Dsui_0869 0.65 -0.9 885,211 + Dsui_0869 0.72 -2.4 885,327 - -0.6 885,341 + Dsui_0870 0.12 +0.5 885,355 + Dsui_0870 0.15 -1.1 885,436 - Dsui_0870 0.35 -2.5 885,445 + Dsui_0870 0.37 +0.5 885,521 + Dsui_0870 0.56 -0.5 885,543 + +0.5 885,610 - Dsui_0870 0.77 -2.5 885,615 - Dsui_0870 0.79 -2.4 885,615 - Dsui_0870 0.79 -2.5 885,627 + Dsui_0870 0.82 +0.5 885,756 - +0.1 885,797 + -1.9 885,899 + Dsui_0871 0.27 -1.9 886,104 - -4.1 886,123 - -4.3 886,179 + -2.9 886,186 + -1.5 886,187 - -0.8 886,187 - -2.6 886,192 - -0.3 886,192 - -0.1 886,192 - -0.6 886,276 - -0.1
Or see this region's nucleotide sequence