Strain Fitness in Dechlorosoma suillum PS around Dsui_0821

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0819 and Dsui_0820 are separated by 10 nucleotidesDsui_0820 and Dsui_0821 are separated by 189 nucleotidesDsui_0821 and Dsui_0822 are separated by 89 nucleotidesDsui_0822 and Dsui_0823 are separated by 114 nucleotides Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467 _0819 Dsui_0820: Dsui_0820 - hypothetical protein, at 831,478 to 831,966 _0820 Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741 _0821 Dsui_0822: Dsui_0822 - DNA-binding ferritin-like protein (oxidative damage protectant), at 834,831 to 835,307 _0822 Dsui_0823: Dsui_0823 - transcriptional regulator, at 835,422 to 836,333 _0823 Position (kb) 832 833 834 835Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 831.171 kb on - strand, within Dsui_0819at 831.183 kb on + strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.330 kb on - strand, within Dsui_0819at 831.332 kb on + strand, within Dsui_0819at 831.363 kb on + strandat 831.363 kb on + strandat 831.371 kb on - strandat 831.416 kb on + strandat 831.427 kb on + strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.471 kb on - strandat 831.535 kb on - strand, within Dsui_0820at 831.587 kb on + strand, within Dsui_0820at 831.619 kb on + strand, within Dsui_0820at 831.645 kb on + strand, within Dsui_0820at 831.652 kb on - strand, within Dsui_0820at 831.653 kb on + strand, within Dsui_0820at 831.716 kb on - strand, within Dsui_0820at 831.767 kb on + strand, within Dsui_0820at 831.775 kb on - strand, within Dsui_0820at 831.777 kb on + strand, within Dsui_0820at 831.785 kb on - strand, within Dsui_0820at 831.797 kb on + strand, within Dsui_0820at 831.819 kb on - strand, within Dsui_0820at 831.822 kb on + strand, within Dsui_0820at 831.860 kb on + strand, within Dsui_0820at 831.861 kb on + strand, within Dsui_0820at 831.914 kb on + strand, within Dsui_0820at 832.013 kb on + strandat 832.049 kb on + strandat 832.055 kb on + strandat 832.064 kb on + strandat 834.636 kb on + strandat 834.639 kb on - strandat 834.678 kb on + strandat 834.678 kb on + strandat 834.708 kb on + strandat 834.720 kb on + strandat 834.736 kb on + strandat 834.743 kb on - strandat 834.764 kb on - strandat 834.770 kb on + strandat 834.775 kb on + strandat 834.778 kb on - strandat 834.778 kb on - strandat 834.779 kb on - strandat 834.785 kb on - strandat 834.785 kb on - strandat 834.854 kb on + strandat 834.854 kb on + strandat 834.856 kb on + strandat 834.858 kb on - strandat 834.862 kb on - strandat 834.886 kb on - strand, within Dsui_0822at 834.935 kb on - strand, within Dsui_0822at 834.935 kb on - strand, within Dsui_0822at 834.950 kb on - strand, within Dsui_0822at 834.967 kb on + strand, within Dsui_0822at 835.007 kb on - strand, within Dsui_0822at 835.046 kb on - strand, within Dsui_0822at 835.073 kb on - strand, within Dsui_0822at 835.083 kb on - strand, within Dsui_0822at 835.109 kb on + strand, within Dsui_0822at 835.109 kb on + strand, within Dsui_0822at 835.117 kb on - strand, within Dsui_0822at 835.117 kb on - strand, within Dsui_0822at 835.118 kb on - strand, within Dsui_0822at 835.127 kb on - strand, within Dsui_0822at 835.153 kb on - strand, within Dsui_0822at 835.161 kb on - strand, within Dsui_0822at 835.162 kb on + strand, within Dsui_0822at 835.170 kb on - strand, within Dsui_0822at 835.217 kb on + strand, within Dsui_0822at 835.217 kb on + strand, within Dsui_0822at 835.219 kb on + strand, within Dsui_0822at 835.219 kb on - strand, within Dsui_0822at 835.241 kb on + strand, within Dsui_0822at 835.249 kb on - strand, within Dsui_0822at 835.317 kb on + strandat 835.318 kb on - strandat 835.318 kb on - strandat 835.325 kb on - strandat 835.326 kb on - strandat 835.360 kb on - strandat 835.414 kb on - strandat 835.420 kb on + strandat 835.422 kb on + strandat 835.430 kb on + strandat 835.430 kb on + strandat 835.430 kb on - strandat 835.430 kb on - strandat 835.430 kb on - strandat 835.432 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.438 kb on - strandat 835.483 kb on + strandat 835.491 kb on - strandat 835.515 kb on - strand, within Dsui_0823at 835.515 kb on - strand, within Dsui_0823at 835.520 kb on - strand, within Dsui_0823at 835.573 kb on - strand, within Dsui_0823at 835.590 kb on + strand, within Dsui_0823at 835.637 kb on + strand, within Dsui_0823at 835.651 kb on + strand, within Dsui_0823at 835.670 kb on + strand, within Dsui_0823at 835.688 kb on - strand, within Dsui_0823at 835.703 kb on + strand, within Dsui_0823at 835.703 kb on + strand, within Dsui_0823at 835.706 kb on - strand, within Dsui_0823at 835.717 kb on + strand, within Dsui_0823at 835.725 kb on - strand, within Dsui_0823at 835.738 kb on + strand, within Dsui_0823at 835.740 kb on - strand, within Dsui_0823

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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831,171 - Dsui_0819 0.73 -2.1
831,183 + Dsui_0819 0.75 +2.1
831,330 - Dsui_0819 0.88 +1.5
831,330 - Dsui_0819 0.88 -1.8
831,330 - Dsui_0819 0.88 -0.5
831,332 + Dsui_0819 0.88 -0.8
831,363 + -1.1
831,363 + -0.5
831,371 - -1.8
831,416 + -0.0
831,427 + -0.6
831,471 - -0.2
831,471 - -1.6
831,471 - -0.5
831,535 - Dsui_0820 0.12 -3.2
831,587 + Dsui_0820 0.22 +0.1
831,619 + Dsui_0820 0.29 -0.1
831,645 + Dsui_0820 0.34 +0.1
831,652 - Dsui_0820 0.36 -2.3
831,653 + Dsui_0820 0.36 -0.1
831,716 - Dsui_0820 0.49 -1.5
831,767 + Dsui_0820 0.59 -0.1
831,775 - Dsui_0820 0.61 -1.1
831,777 + Dsui_0820 0.61 -0.0
831,785 - Dsui_0820 0.63 -2.3
831,797 + Dsui_0820 0.65 +0.1
831,819 - Dsui_0820 0.70 -2.3
831,822 + Dsui_0820 0.70 +0.0
831,860 + Dsui_0820 0.78 +0.1
831,861 + Dsui_0820 0.78 +0.2
831,914 + Dsui_0820 0.89 -0.0
832,013 + -0.1
832,049 + +0.1
832,055 + -0.2
832,064 + +0.7
834,636 + -1.1
834,639 - -0.5
834,678 + -1.2
834,678 + -1.4
834,708 + -3.1
834,720 + -1.0
834,736 + -0.1
834,743 - -0.5
834,764 - -1.7
834,770 + +0.1
834,775 + -0.0
834,778 - -0.2
834,778 - -0.4
834,779 - -0.4
834,785 - -0.3
834,785 - +0.1
834,854 + -1.6
834,854 + -1.8
834,856 + -0.8
834,858 - -0.0
834,862 - -0.2
834,886 - Dsui_0822 0.12 +0.0
834,935 - Dsui_0822 0.22 +0.1
834,935 - Dsui_0822 0.22 +0.1
834,950 - Dsui_0822 0.25 -0.2
834,967 + Dsui_0822 0.29 -0.5
835,007 - Dsui_0822 0.37 -0.1
835,046 - Dsui_0822 0.45 +0.2
835,073 - Dsui_0822 0.51 +0.2
835,083 - Dsui_0822 0.53 -0.2
835,109 + Dsui_0822 0.58 -0.0
835,109 + Dsui_0822 0.58 -0.5
835,117 - Dsui_0822 0.60 -0.0
835,117 - Dsui_0822 0.60 +0.8
835,118 - Dsui_0822 0.60 -0.1
835,127 - Dsui_0822 0.62 +0.3
835,153 - Dsui_0822 0.68 +0.1
835,161 - Dsui_0822 0.69 -0.1
835,162 + Dsui_0822 0.69 +0.5
835,170 - Dsui_0822 0.71 +0.2
835,217 + Dsui_0822 0.81 -0.5
835,217 + Dsui_0822 0.81 -1.1
835,219 + Dsui_0822 0.81 -1.5
835,219 - Dsui_0822 0.81 +0.1
835,241 + Dsui_0822 0.86 +0.5
835,249 - Dsui_0822 0.88 -0.1
835,317 + -2.3
835,318 - -0.6
835,318 - +0.0
835,325 - -1.1
835,326 - -0.0
835,360 - -0.2
835,414 - -0.3
835,420 + +0.5
835,422 + -2.8
835,430 + -1.8
835,430 + +0.5
835,430 - +0.1
835,430 - +0.6
835,430 - +1.2
835,432 - +0.0
835,438 - -1.0
835,438 - +0.1
835,438 - -0.1
835,438 - -0.3
835,483 + -1.8
835,491 - +0.1
835,515 - Dsui_0823 0.10 -0.6
835,515 - Dsui_0823 0.10 -0.4
835,520 - Dsui_0823 0.11 +0.0
835,573 - Dsui_0823 0.17 -0.5
835,590 + Dsui_0823 0.18 -0.5
835,637 + Dsui_0823 0.24 +0.5
835,651 + Dsui_0823 0.25 -1.5
835,670 + Dsui_0823 0.27 -1.1
835,688 - Dsui_0823 0.29 +0.3
835,703 + Dsui_0823 0.31 +0.5
835,703 + Dsui_0823 0.31 -0.5
835,706 - Dsui_0823 0.31 -0.1
835,717 + Dsui_0823 0.32 +0.5
835,725 - Dsui_0823 0.33 -0.3
835,738 + Dsui_0823 0.35 +0.5
835,740 - Dsui_0823 0.35 -0.1

Or see this region's nucleotide sequence