Strain Fitness in Dechlorosoma suillum PS around Dsui_0777

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0776 and Dsui_0777 are separated by 11 nucleotidesDsui_0777 and Dsui_0778 overlap by 4 nucleotidesDsui_0778 and Dsui_0779 are separated by 249 nucleotides Dsui_0776: Dsui_0776 - PAS domain S-box, at 777,645 to 781,565 _0776 Dsui_0777: Dsui_0777 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 781,577 to 782,740 _0777 Dsui_0778: Dsui_0778 - small protein A (tmRNA-binding), at 782,737 to 783,222 _0778 Dsui_0779: Dsui_0779 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 783,472 to 787,152 _0779 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1at 780.592 kb on + strand, within Dsui_0776at 780.685 kb on + strand, within Dsui_0776at 780.685 kb on + strand, within Dsui_0776at 780.685 kb on + strandat 780.715 kb on + strandat 780.738 kb on - strand, within Dsui_0776at 780.786 kb on - strand, within Dsui_0776at 780.857 kb on + strandat 780.872 kb on - strand, within Dsui_0776at 780.874 kb on + strand, within Dsui_0776at 780.882 kb on - strand, within Dsui_0776at 781.002 kb on - strand, within Dsui_0776at 781.034 kb on + strand, within Dsui_0776at 781.037 kb on - strand, within Dsui_0776at 781.200 kb on + strandat 781.213 kb on - strandat 781.239 kb on - strandat 781.365 kb on - strandat 781.418 kb on - strandat 781.469 kb on - strandat 781.498 kb on - strandat 781.498 kb on - strandat 781.502 kb on + strandat 781.516 kb on - strandat 781.544 kb on - strandat 781.544 kb on - strandat 781.559 kb on + strandat 781.574 kb on + strandat 781.680 kb on + strandat 781.680 kb on + strandat 781.743 kb on + strand, within Dsui_0777at 781.771 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.782 kb on + strand, within Dsui_0777at 781.784 kb on - strand, within Dsui_0777at 781.790 kb on - strand, within Dsui_0777at 781.794 kb on + strand, within Dsui_0777at 781.806 kb on + strand, within Dsui_0777at 781.881 kb on + strand, within Dsui_0777at 781.908 kb on + strand, within Dsui_0777at 782.031 kb on + strand, within Dsui_0777at 782.082 kb on - strand, within Dsui_0777at 782.205 kb on - strandat 782.300 kb on - strand, within Dsui_0777at 782.325 kb on + strand, within Dsui_0777at 782.347 kb on + strand, within Dsui_0777at 782.362 kb on - strand, within Dsui_0777at 782.447 kb on + strand, within Dsui_0777at 782.447 kb on + strand, within Dsui_0777at 782.448 kb on + strand, within Dsui_0777at 782.496 kb on - strand, within Dsui_0777at 782.575 kb on - strand, within Dsui_0777at 782.674 kb on + strandat 782.737 kb on + strandat 782.777 kb on - strandat 782.917 kb on - strandat 782.962 kb on - strand, within Dsui_0778at 782.989 kb on - strand, within Dsui_0778at 782.989 kb on - strand, within Dsui_0778at 782.999 kb on - strand, within Dsui_0778at 783.035 kb on + strand, within Dsui_0778at 783.055 kb on + strand, within Dsui_0778at 783.216 kb on + strandat 783.306 kb on + strandat 783.314 kb on - strandat 783.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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780,592 + Dsui_0776 0.75 -1.2
780,685 + Dsui_0776 0.78 -0.6
780,685 + Dsui_0776 0.78 -1.6
780,685 + -1.6
780,715 + +1.4
780,738 - Dsui_0776 0.79 +0.4
780,786 - Dsui_0776 0.80 +0.4
780,857 + +0.4
780,872 - Dsui_0776 0.82 -0.6
780,874 + Dsui_0776 0.82 -1.6
780,882 - Dsui_0776 0.83 -0.6
781,002 - Dsui_0776 0.86 -0.6
781,034 + Dsui_0776 0.86 -0.6
781,037 - Dsui_0776 0.87 -2.1
781,200 + -2.6
781,213 - -1.1
781,239 - -1.6
781,365 - -2.4
781,418 - -2.4
781,469 - +0.4
781,498 - +0.4
781,498 - +0.4
781,502 + -0.6
781,516 - -1.9
781,544 - +0.4
781,544 - +0.4
781,559 + -0.3
781,574 + -0.6
781,680 + -1.0
781,680 + -0.4
781,743 + Dsui_0777 0.14 +0.4
781,771 + Dsui_0777 0.17 -0.7
781,782 + Dsui_0777 0.18 -0.6
781,782 + Dsui_0777 0.18 -1.5
781,782 + Dsui_0777 0.18 +0.4
781,784 - Dsui_0777 0.18 -1.6
781,790 - Dsui_0777 0.18 -1.9
781,794 + Dsui_0777 0.19 -0.1
781,806 + Dsui_0777 0.20 -0.9
781,881 + Dsui_0777 0.26 -1.9
781,908 + Dsui_0777 0.28 -0.6
782,031 + Dsui_0777 0.39 +0.4
782,082 - Dsui_0777 0.43 -2.1
782,205 - +0.4
782,300 - Dsui_0777 0.62 -1.6
782,325 + Dsui_0777 0.64 -2.5
782,347 + Dsui_0777 0.66 -1.6
782,362 - Dsui_0777 0.67 -1.1
782,447 + Dsui_0777 0.75 -0.7
782,447 + Dsui_0777 0.75 -0.6
782,448 + Dsui_0777 0.75 +0.4
782,496 - Dsui_0777 0.79 -3.1
782,575 - Dsui_0777 0.86 -0.6
782,674 + +0.9
782,737 + +1.0
782,777 - +0.4
782,917 - +0.4
782,962 - Dsui_0778 0.46 -2.6
782,989 - Dsui_0778 0.52 -1.1
782,989 - Dsui_0778 0.52 -2.1
782,999 - Dsui_0778 0.54 -2.4
783,035 + Dsui_0778 0.61 -0.6
783,055 + Dsui_0778 0.65 -1.1
783,216 + -2.6
783,306 + -0.4
783,314 - -2.1
783,364 + -0.7

Or see this region's nucleotide sequence