Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0683 and Dsui_0684 are separated by 105 nucleotides Dsui_0684 and Dsui_0685 are separated by 30 nucleotides Dsui_0685 and Dsui_0686 are separated by 8 nucleotides
Dsui_0683: Dsui_0683 - soluble lytic murein transglycosylase-like protein, at 680,289 to 682,277
_0683
Dsui_0684: Dsui_0684 - putative nucleoside-diphosphate sugar epimerase, at 682,383 to 683,342
_0684
Dsui_0685: Dsui_0685 - glutathione S-transferase, at 683,373 to 684,008
_0685
Dsui_0686: Dsui_0686 - tRNA nucleotidyltransferase/poly(A) polymerase, at 684,017 to 685,237
_0686
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 681.386 kb on + strand, within Dsui_0683 at 681.526 kb on + strand, within Dsui_0683 at 681.593 kb on + strand, within Dsui_0683 at 681.671 kb on - strand, within Dsui_0683 at 681.727 kb on + strand, within Dsui_0683 at 681.757 kb on - strand, within Dsui_0683 at 681.861 kb on - strand, within Dsui_0683 at 681.948 kb on - strand, within Dsui_0683 at 681.952 kb on + strand, within Dsui_0683 at 681.962 kb on + strand, within Dsui_0683 at 681.991 kb on + strand, within Dsui_0683 at 682.015 kb on - strand, within Dsui_0683 at 682.168 kb on - strand at 682.198 kb on - strand at 682.234 kb on - strand at 682.308 kb on + strand at 682.328 kb on - strand at 682.355 kb on - strand at 682.356 kb on + strand at 682.361 kb on - strand at 682.369 kb on + strand at 682.377 kb on - strand at 682.518 kb on + strand, within Dsui_0684 at 682.664 kb on + strand, within Dsui_0684 at 682.672 kb on - strand at 682.750 kb on - strand, within Dsui_0684 at 682.768 kb on + strand, within Dsui_0684 at 682.881 kb on + strand, within Dsui_0684 at 682.891 kb on + strand, within Dsui_0684 at 682.899 kb on - strand, within Dsui_0684 at 682.901 kb on + strand, within Dsui_0684 at 682.909 kb on - strand, within Dsui_0684 at 682.914 kb on - strand, within Dsui_0684 at 682.917 kb on + strand, within Dsui_0684 at 682.974 kb on + strand, within Dsui_0684 at 683.001 kb on - strand at 683.011 kb on + strand, within Dsui_0684 at 683.019 kb on - strand, within Dsui_0684 at 683.019 kb on - strand, within Dsui_0684 at 683.023 kb on + strand, within Dsui_0684 at 683.031 kb on - strand, within Dsui_0684 at 683.031 kb on - strand, within Dsui_0684 at 683.043 kb on + strand, within Dsui_0684 at 683.046 kb on - strand, within Dsui_0684 at 683.047 kb on + strand, within Dsui_0684 at 683.135 kb on + strand, within Dsui_0684 at 683.278 kb on + strand at 683.492 kb on + strand, within Dsui_0685 at 683.520 kb on + strand, within Dsui_0685 at 683.800 kb on - strand at 683.830 kb on + strand, within Dsui_0685 at 683.899 kb on - strand, within Dsui_0685
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 681,386 + Dsui_0683 0.55 -1.6 681,526 + Dsui_0683 0.62 -1.6 681,593 + Dsui_0683 0.66 -1.7 681,671 - Dsui_0683 0.69 +0.4 681,727 + Dsui_0683 0.72 -1.7 681,757 - Dsui_0683 0.74 +0.4 681,861 - Dsui_0683 0.79 -1.2 681,948 - Dsui_0683 0.83 +0.4 681,952 + Dsui_0683 0.84 -1.8 681,962 + Dsui_0683 0.84 -1.6 681,991 + Dsui_0683 0.86 -2.4 682,015 - Dsui_0683 0.87 +0.4 682,168 - +0.4 682,198 - +0.4 682,234 - +0.4 682,308 + +0.3 682,328 - -0.6 682,355 - -0.6 682,356 + +0.2 682,361 - -0.6 682,369 + +0.1 682,377 - +0.4 682,518 + Dsui_0684 0.14 +0.4 682,664 + Dsui_0684 0.29 +0.3 682,672 - -0.6 682,750 - Dsui_0684 0.38 +0.4 682,768 + Dsui_0684 0.40 +0.1 682,881 + Dsui_0684 0.52 +0.2 682,891 + Dsui_0684 0.53 +0.3 682,899 - Dsui_0684 0.54 +1.1 682,901 + Dsui_0684 0.54 -0.1 682,909 - Dsui_0684 0.55 -0.6 682,914 - Dsui_0684 0.55 +0.4 682,917 + Dsui_0684 0.56 +0.1 682,974 + Dsui_0684 0.62 +0.8 683,001 - +0.4 683,011 + Dsui_0684 0.65 +0.5 683,019 - Dsui_0684 0.66 -1.6 683,019 - Dsui_0684 0.66 -2.8 683,023 + Dsui_0684 0.67 +0.2 683,031 - Dsui_0684 0.68 -1.6 683,031 - Dsui_0684 0.68 +0.4 683,043 + Dsui_0684 0.69 +0.6 683,046 - Dsui_0684 0.69 -1.4 683,047 + Dsui_0684 0.69 +0.3 683,135 + Dsui_0684 0.78 +0.4 683,278 + +0.3 683,492 + Dsui_0685 0.19 -0.4 683,520 + Dsui_0685 0.23 -0.3 683,800 - +1.4 683,830 + Dsui_0685 0.72 -0.3 683,899 - Dsui_0685 0.83 -2.0
Or see this region's nucleotide sequence