Strain Fitness in Dechlorosoma suillum PS around Dsui_0637

Experiment: ALP with Zinc 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0635 and Dsui_0636 are separated by 74 nucleotidesDsui_0636 and Dsui_0637 are separated by 3 nucleotidesDsui_0637 and Dsui_0638 overlap by 4 nucleotidesDsui_0638 and Dsui_0639 are separated by 107 nucleotides Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385 _0635 Dsui_0636: Dsui_0636 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 630,460 to 631,197 _0636 Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875 _0637 Dsui_0638: Dsui_0638 - ABC-type polar amino acid transport system, ATPase component, at 631,872 to 632,600 _0638 Dsui_0639: Dsui_0639 - hypothetical protein, at 632,708 to 632,929 _0639 Position (kb) 631 632Strain fitness (log2 ratio) -3 -2 -1 0 1at 630.230 kb on + strand, within Dsui_0635at 630.241 kb on + strand, within Dsui_0635at 630.257 kb on - strand, within Dsui_0635at 630.276 kb on - strand, within Dsui_0635at 630.382 kb on - strandat 630.494 kb on + strandat 630.494 kb on + strandat 630.497 kb on - strandat 630.529 kb on - strandat 630.531 kb on + strandat 630.531 kb on + strandat 630.554 kb on - strand, within Dsui_0636at 630.554 kb on - strand, within Dsui_0636at 630.599 kb on - strand, within Dsui_0636at 630.663 kb on + strand, within Dsui_0636at 630.671 kb on - strand, within Dsui_0636at 630.688 kb on + strand, within Dsui_0636at 630.745 kb on - strand, within Dsui_0636at 630.809 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.816 kb on + strand, within Dsui_0636at 630.874 kb on + strand, within Dsui_0636at 630.895 kb on + strand, within Dsui_0636at 630.915 kb on - strand, within Dsui_0636at 630.927 kb on - strand, within Dsui_0636at 631.080 kb on - strand, within Dsui_0636at 631.085 kb on - strand, within Dsui_0636at 631.097 kb on + strand, within Dsui_0636at 631.126 kb on - strandat 631.186 kb on - strandat 631.268 kb on + strandat 631.386 kb on + strand, within Dsui_0637at 631.452 kb on - strand, within Dsui_0637at 631.497 kb on - strand, within Dsui_0637at 631.504 kb on + strand, within Dsui_0637at 631.515 kb on + strand, within Dsui_0637at 631.523 kb on - strand, within Dsui_0637at 631.586 kb on - strand, within Dsui_0637at 631.638 kb on + strand, within Dsui_0637at 631.646 kb on - strand, within Dsui_0637at 631.647 kb on - strand, within Dsui_0637at 631.682 kb on + strand, within Dsui_0637at 631.917 kb on - strandat 631.941 kb on - strandat 631.962 kb on - strand, within Dsui_0638at 631.990 kb on + strand, within Dsui_0638at 631.998 kb on - strand, within Dsui_0638at 632.000 kb on + strand, within Dsui_0638at 632.026 kb on + strand, within Dsui_0638at 632.104 kb on - strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.177 kb on + strand, within Dsui_0638at 632.184 kb on + strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638at 632.185 kb on - strand, within Dsui_0638at 632.209 kb on - strand, within Dsui_0638at 632.214 kb on + strand, within Dsui_0638at 632.221 kb on + strand, within Dsui_0638at 632.386 kb on + strand, within Dsui_0638at 632.594 kb on + strandat 632.594 kb on + strandat 632.594 kb on + strandat 632.602 kb on - strandat 632.692 kb on - strandat 632.737 kb on - strand, within Dsui_0639at 632.744 kb on + strand, within Dsui_0639at 632.747 kb on - strand, within Dsui_0639

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
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630,230 + Dsui_0635 0.83 -0.7
630,241 + Dsui_0635 0.84 -0.3
630,257 - Dsui_0635 0.86 +0.4
630,276 - Dsui_0635 0.88 -0.2
630,382 - -0.6
630,494 + -0.5
630,494 + -0.5
630,497 - -1.6
630,529 - -1.2
630,531 + -0.5
630,531 + -1.2
630,554 - Dsui_0636 0.13 -2.8
630,554 - Dsui_0636 0.13 -0.6
630,599 - Dsui_0636 0.19 -1.6
630,663 + Dsui_0636 0.28 -0.9
630,671 - Dsui_0636 0.29 +0.4
630,688 + Dsui_0636 0.31 +0.0
630,745 - Dsui_0636 0.39 -0.6
630,809 - Dsui_0636 0.47 +0.4
630,814 - Dsui_0636 0.48 -0.6
630,814 - Dsui_0636 0.48 -1.6
630,816 + Dsui_0636 0.48 -0.0
630,874 + Dsui_0636 0.56 -0.8
630,895 + Dsui_0636 0.59 -0.6
630,915 - Dsui_0636 0.62 -3.6
630,927 - Dsui_0636 0.63 -1.6
631,080 - Dsui_0636 0.84 -2.1
631,085 - Dsui_0636 0.85 -2.2
631,097 + Dsui_0636 0.86 -0.8
631,126 - +0.4
631,186 - -1.2
631,268 + -1.4
631,386 + Dsui_0637 0.27 -1.2
631,452 - Dsui_0637 0.37 -1.2
631,497 - Dsui_0637 0.44 -2.8
631,504 + Dsui_0637 0.45 -1.0
631,515 + Dsui_0637 0.47 -0.8
631,523 - Dsui_0637 0.48 -2.0
631,586 - Dsui_0637 0.57 -0.6
631,638 + Dsui_0637 0.65 -1.2
631,646 - Dsui_0637 0.66 -1.2
631,647 - Dsui_0637 0.66 -0.6
631,682 + Dsui_0637 0.71 -0.6
631,917 - +0.4
631,941 - -2.2
631,962 - Dsui_0638 0.12 +0.4
631,990 + Dsui_0638 0.16 -0.5
631,998 - Dsui_0638 0.17 +0.4
632,000 + Dsui_0638 0.18 -0.8
632,026 + Dsui_0638 0.21 -0.7
632,104 - Dsui_0638 0.32 +0.4
632,177 + Dsui_0638 0.42 -0.6
632,177 + Dsui_0638 0.42 -1.2
632,184 + Dsui_0638 0.43 -1.1
632,185 - Dsui_0638 0.43 +1.4
632,185 - Dsui_0638 0.43 -2.2
632,209 - Dsui_0638 0.46 -0.5
632,214 + Dsui_0638 0.47 -0.7
632,221 + Dsui_0638 0.48 -0.5
632,386 + Dsui_0638 0.71 -0.5
632,594 + -0.1
632,594 + +0.0
632,594 + -0.1
632,602 - +0.9
632,692 - -0.1
632,737 - Dsui_0639 0.13 -0.2
632,744 + Dsui_0639 0.16 -0.4
632,747 - Dsui_0639 0.18 -0.3

Or see this region's nucleotide sequence