Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0622 and Dsui_0623 are separated by 1 nucleotides Dsui_0623 and Dsui_0624 are separated by 12 nucleotides Dsui_0624 and Dsui_0625 are separated by 2 nucleotides Dsui_0625 and Dsui_0626 are separated by 2 nucleotides
Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001
_0622
Dsui_0623: Dsui_0623 - putative lipoprotein involved in nitrous oxide reduction, at 618,003 to 618,488
_0623
Dsui_0624: Dsui_0624 - hypothetical protein, at 618,501 to 619,610
_0624
Dsui_0625: Dsui_0625 - putative metal-sulfur cluster biosynthetic enzyme, at 619,613 to 619,924
_0625
Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643
_0626
Position (kb)
618
619
620 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 617.518 kb on + strand, within Dsui_0622 at 617.550 kb on - strand, within Dsui_0622 at 617.621 kb on + strand, within Dsui_0622 at 617.634 kb on - strand, within Dsui_0622 at 617.639 kb on - strand, within Dsui_0622 at 617.687 kb on - strand, within Dsui_0622 at 617.713 kb on + strand, within Dsui_0622 at 617.814 kb on - strand, within Dsui_0622 at 617.819 kb on - strand, within Dsui_0622 at 617.906 kb on - strand, within Dsui_0622 at 617.950 kb on - strand at 618.035 kb on + strand at 618.137 kb on - strand, within Dsui_0623 at 618.261 kb on - strand, within Dsui_0623 at 618.271 kb on - strand, within Dsui_0623 at 618.276 kb on - strand, within Dsui_0623 at 618.304 kb on + strand, within Dsui_0623 at 618.337 kb on + strand, within Dsui_0623 at 618.507 kb on - strand at 618.667 kb on - strand, within Dsui_0624 at 618.995 kb on + strand at 619.000 kb on + strand at 619.110 kb on + strand, within Dsui_0624 at 619.591 kb on + strand at 619.660 kb on - strand, within Dsui_0625 at 619.693 kb on + strand, within Dsui_0625 at 619.701 kb on - strand, within Dsui_0625 at 619.752 kb on - strand, within Dsui_0625 at 619.827 kb on + strand, within Dsui_0625 at 619.835 kb on - strand, within Dsui_0625 at 619.856 kb on - strand, within Dsui_0625 at 619.891 kb on - strand, within Dsui_0625 at 619.896 kb on - strand at 619.946 kb on + strand at 619.987 kb on + strand at 620.177 kb on - strand, within Dsui_0626 at 620.177 kb on - strand, within Dsui_0626 at 620.310 kb on - strand, within Dsui_0626 at 620.336 kb on + strand, within Dsui_0626 at 620.496 kb on - strand, within Dsui_0626 at 620.502 kb on + strand, within Dsui_0626
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 617,518 + Dsui_0622 0.20 -1.7 617,550 - Dsui_0622 0.25 +0.3 617,621 + Dsui_0622 0.37 -2.0 617,634 - Dsui_0622 0.39 -3.1 617,639 - Dsui_0622 0.40 -2.5 617,687 - Dsui_0622 0.48 -0.7 617,713 + Dsui_0622 0.52 -0.1 617,814 - Dsui_0622 0.69 -1.3 617,819 - Dsui_0622 0.70 -2.7 617,906 - Dsui_0622 0.84 +0.3 617,950 - +0.3 618,035 + -1.1 618,137 - Dsui_0623 0.28 -0.7 618,261 - Dsui_0623 0.53 +0.3 618,271 - Dsui_0623 0.55 +0.3 618,276 - Dsui_0623 0.56 +0.3 618,304 + Dsui_0623 0.62 -0.7 618,337 + Dsui_0623 0.69 -0.4 618,507 - -0.5 618,667 - Dsui_0624 0.15 +0.1 618,995 + +0.3 619,000 + -0.7 619,110 + Dsui_0624 0.55 -2.8 619,591 + +0.3 619,660 - Dsui_0625 0.15 +0.0 619,693 + Dsui_0625 0.26 +0.3 619,701 - Dsui_0625 0.28 -0.2 619,752 - Dsui_0625 0.45 -0.5 619,827 + Dsui_0625 0.69 -1.7 619,835 - Dsui_0625 0.71 -0.8 619,856 - Dsui_0625 0.78 +0.1 619,891 - Dsui_0625 0.89 -0.3 619,896 - -0.5 619,946 + -2.5 619,987 + -2.2 620,177 - Dsui_0626 0.35 +0.3 620,177 - Dsui_0626 0.35 -0.5 620,310 - Dsui_0626 0.53 -0.6 620,336 + Dsui_0626 0.57 +0.3 620,496 - Dsui_0626 0.79 +0.1 620,502 + Dsui_0626 0.80 -1.7
Or see this region's nucleotide sequence