Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0611 and Dsui_0612 are separated by 315 nucleotides Dsui_0612 and Dsui_0613 are separated by 242 nucleotides Dsui_0613 and Dsui_0614 overlap by 4 nucleotides Dsui_0614 and Dsui_0615 overlap by 38 nucleotides
Dsui_0611: Dsui_0611 - phosphotransferase system cellobiose-specific component IIC, at 606,076 to 608,163
_0611
Dsui_0612: Dsui_0612 - hypothetical protein, at 608,479 to 608,775
_0612
Dsui_0613: Dsui_0613 - uncharacterized protein SCO1/SenC/PrrC, at 609,018 to 609,569
_0613
Dsui_0614: Dsui_0614 - hypothetical protein, at 609,566 to 609,901
_0614
Dsui_0615: Dsui_0615 - ABC-type transport system, involved in lipoprotein release, permease component, at 609,864 to 611,000
_0615
Position (kb) 609
610 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 608.028 kb on + strand at 608.043 kb on + strand at 608.082 kb on + strand at 608.090 kb on - strand at 608.175 kb on - strand at 608.213 kb on + strand at 608.213 kb on + strand at 608.221 kb on - strand at 608.334 kb on + strand at 608.460 kb on + strand at 608.478 kb on - strand at 608.478 kb on - strand at 608.976 kb on + strand at 609.066 kb on - strand at 609.273 kb on + strand, within Dsui_0613 at 609.560 kb on - strand at 609.561 kb on - strand at 609.622 kb on + strand, within Dsui_0614 at 609.768 kb on - strand, within Dsui_0614 at 609.869 kb on + strand at 609.905 kb on + strand at 609.923 kb on - strand at 609.949 kb on - strand at 610.053 kb on - strand, within Dsui_0615 at 610.081 kb on + strand, within Dsui_0615 at 610.166 kb on + strand, within Dsui_0615 at 610.181 kb on + strand, within Dsui_0615 at 610.191 kb on + strand, within Dsui_0615 at 610.200 kb on - strand, within Dsui_0615 at 610.328 kb on - strand, within Dsui_0615 at 610.375 kb on - strand, within Dsui_0615 at 610.552 kb on - strand, within Dsui_0615
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 608,028 + -2.3 608,043 + -1.3 608,082 + +0.3 608,090 - -1.3 608,175 - -2.7 608,213 + -1.3 608,213 + +0.3 608,221 - -0.7 608,334 + -1.7 608,460 + -1.3 608,478 - -0.7 608,478 - -4.7 608,976 + -0.8 609,066 - +0.3 609,273 + Dsui_0613 0.46 +0.0 609,560 - -2.0 609,561 - -0.7 609,622 + Dsui_0614 0.17 -0.4 609,768 - Dsui_0614 0.60 -2.0 609,869 + -0.6 609,905 + -0.2 609,923 - -0.7 609,949 - +0.3 610,053 - Dsui_0615 0.17 -2.7 610,081 + Dsui_0615 0.19 -0.0 610,166 + Dsui_0615 0.27 -1.2 610,181 + Dsui_0615 0.28 -0.8 610,191 + Dsui_0615 0.29 -0.6 610,200 - Dsui_0615 0.30 -2.5 610,328 - Dsui_0615 0.41 -2.0 610,375 - Dsui_0615 0.45 -2.9 610,552 - Dsui_0615 0.61 -0.7
Or see this region's nucleotide sequence