Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0580 and Dsui_0581 are separated by 7 nucleotides Dsui_0581 and Dsui_0582 are separated by 74 nucleotides Dsui_0582 and Dsui_0583 are separated by 76 nucleotides Dsui_0583 and Dsui_0584 overlap by 4 nucleotides
Dsui_0580: Dsui_0580 - ATP-dependent protease HslVU, ATPase subunit, at 577,832 to 579,169
_0580
Dsui_0581: Dsui_0581 - ATP-dependent protease HslVU, peptidase subunit, at 579,177 to 579,713
_0581
Dsui_0582: Dsui_0582 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 579,788 to 581,017
_0582
Dsui_0583: Dsui_0583 - ABC-type Mn2+/Zn2+ transport system, permease component, at 581,094 to 581,912
_0583
Dsui_0584: Dsui_0584 - ATPase component of Mn/Zn ABC-type transporter, at 581,909 to 582,502
_0584
Position (kb)
579
580
581
582 Strain fitness (log2 ratio)
-2
-1
0
1 at 578.890 kb on + strand, within Dsui_0580 at 578.900 kb on + strand, within Dsui_0580 at 579.053 kb on - strand at 579.102 kb on + strand at 579.279 kb on - strand, within Dsui_0581 at 579.519 kb on - strand, within Dsui_0581 at 579.538 kb on - strand, within Dsui_0581 at 579.580 kb on + strand, within Dsui_0581 at 579.598 kb on - strand, within Dsui_0581 at 579.640 kb on - strand, within Dsui_0581 at 579.686 kb on + strand at 579.707 kb on + strand at 580.134 kb on - strand, within Dsui_0582 at 580.168 kb on - strand, within Dsui_0582 at 580.389 kb on + strand at 580.389 kb on + strand at 580.397 kb on - strand, within Dsui_0582 at 580.590 kb on - strand, within Dsui_0582 at 580.746 kb on - strand, within Dsui_0582 at 580.758 kb on + strand at 580.767 kb on - strand, within Dsui_0582 at 580.875 kb on + strand, within Dsui_0582 at 580.883 kb on - strand, within Dsui_0582 at 580.975 kb on + strand at 580.984 kb on - strand at 580.992 kb on - strand at 581.053 kb on + strand at 581.061 kb on - strand at 581.067 kb on + strand at 581.069 kb on - strand at 581.168 kb on + strand at 581.171 kb on - strand at 581.196 kb on - strand, within Dsui_0583 at 581.320 kb on - strand, within Dsui_0583 at 581.390 kb on - strand, within Dsui_0583 at 581.417 kb on - strand, within Dsui_0583 at 581.469 kb on + strand at 581.555 kb on - strand, within Dsui_0583 at 581.609 kb on + strand at 581.744 kb on - strand, within Dsui_0583 at 581.827 kb on - strand, within Dsui_0583 at 581.921 kb on - strand at 581.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 578,890 + Dsui_0580 0.79 +0.3 578,900 + Dsui_0580 0.80 +0.3 579,053 - -0.5 579,102 + +0.3 579,279 - Dsui_0581 0.19 -0.8 579,519 - Dsui_0581 0.64 +0.6 579,538 - Dsui_0581 0.67 -0.3 579,580 + Dsui_0581 0.75 -2.5 579,598 - Dsui_0581 0.78 -0.3 579,640 - Dsui_0581 0.86 -0.1 579,686 + +0.3 579,707 + +0.3 580,134 - Dsui_0582 0.28 +0.0 580,168 - Dsui_0582 0.31 +0.5 580,389 + +0.3 580,389 + +0.3 580,397 - Dsui_0582 0.50 -0.1 580,590 - Dsui_0582 0.65 +0.0 580,746 - Dsui_0582 0.78 +0.2 580,758 + +0.3 580,767 - Dsui_0582 0.80 -0.7 580,875 + Dsui_0582 0.88 -0.6 580,883 - Dsui_0582 0.89 -0.0 580,975 + -0.7 580,984 - -0.1 580,992 - +0.0 581,053 + -2.5 581,061 - -0.0 581,067 + -0.7 581,069 - -0.8 581,168 + -1.7 581,171 - -1.7 581,196 - Dsui_0583 0.12 -2.3 581,320 - Dsui_0583 0.28 -1.1 581,390 - Dsui_0583 0.36 -1.1 581,417 - Dsui_0583 0.39 -1.2 581,469 + +0.3 581,555 - Dsui_0583 0.56 -1.4 581,609 + -0.7 581,744 - Dsui_0583 0.79 -0.6 581,827 - Dsui_0583 0.89 -0.9 581,921 - -0.3 581,984 - -0.7
Or see this region's nucleotide sequence