Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0543 and Dsui_0544 are separated by 124 nucleotides Dsui_0544 and Dsui_0545 are separated by 94 nucleotides Dsui_0545 and Dsui_0546 are separated by 81 nucleotides Dsui_0546 and Dsui_0547 are separated by 60 nucleotides Dsui_0547 and Dsui_0548 are separated by 72 nucleotides
Dsui_0543: Dsui_0543 - malic enzyme, at 547,934 to 550,210
_0543
Dsui_0544: Dsui_0544 - flagellar basal body-associated protein, at 550,335 to 550,724
_0544
Dsui_0545: Dsui_0545 - tRNA-Thr, at 550,819 to 550,893
_0545
Dsui_0546: Dsui_0546 - tRNA-Lys, at 550,975 to 551,050
_0546
Dsui_0547: Dsui_0547 - tRNA-Lys, at 551,111 to 551,186
_0547
Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365
_0548
Position (kb) 550
551 Strain fitness (log2 ratio) -2
-1
0
1 at 549.901 kb on + strand, within Dsui_0543 at 549.963 kb on - strand, within Dsui_0543 at 550.219 kb on + strand at 550.227 kb on - strand at 550.232 kb on - strand at 550.301 kb on + strand at 550.378 kb on + strand, within Dsui_0544 at 550.385 kb on - strand, within Dsui_0544 at 550.508 kb on + strand, within Dsui_0544 at 550.689 kb on + strand at 550.699 kb on + strand at 550.707 kb on - strand at 550.738 kb on - strand at 550.751 kb on - strand at 550.754 kb on + strand at 550.799 kb on - strand at 550.806 kb on - strand at 550.809 kb on + strand at 551.340 kb on + strand at 551.391 kb on - strand, within Dsui_0548 at 551.529 kb on - strand, within Dsui_0548 at 551.585 kb on + strand at 551.616 kb on + strand, within Dsui_0548
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 549,901 + Dsui_0543 0.86 -0.7 549,963 - Dsui_0543 0.89 -1.3 550,219 + -0.1 550,227 - -0.8 550,232 - -0.7 550,301 + -1.6 550,378 + Dsui_0544 0.11 +0.3 550,385 - Dsui_0544 0.13 -0.1 550,508 + Dsui_0544 0.44 -0.8 550,689 + -2.3 550,699 + -1.3 550,707 - -0.5 550,738 - -0.3 550,751 - -0.4 550,754 + +1.1 550,799 - -0.1 550,806 - -0.1 550,809 + -0.7 551,340 + -1.3 551,391 - Dsui_0548 0.12 -0.8 551,529 - Dsui_0548 0.24 -0.3 551,585 + +0.3 551,616 + Dsui_0548 0.32 -0.7
Or see this region's nucleotide sequence