Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0488 and Dsui_0489 are separated by 72 nucleotides Dsui_0489 and Dsui_0490 are separated by 68 nucleotides Dsui_0490 and Dsui_0491 overlap by 4 nucleotides
Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474
_0488
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861
_0490
Dsui_0491: Dsui_0491 - putative oxygen-independent coproporphyrinogen III oxidase, at 493,858 to 495,096
_0491
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 491.355 kb on - strand, within Dsui_0488 at 491.357 kb on + strand, within Dsui_0488 at 491.395 kb on + strand at 491.436 kb on + strand at 491.442 kb on - strand at 491.568 kb on + strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.577 kb on - strand at 491.613 kb on - strand at 491.615 kb on + strand at 491.717 kb on - strand, within Dsui_0489 at 492.008 kb on - strand, within Dsui_0489 at 492.108 kb on - strand, within Dsui_0489 at 492.196 kb on + strand at 492.199 kb on - strand, within Dsui_0489 at 492.204 kb on - strand at 492.212 kb on + strand at 492.237 kb on - strand at 492.252 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.273 kb on + strand at 492.273 kb on + strand at 492.397 kb on - strand at 492.416 kb on + strand at 492.443 kb on + strand at 492.522 kb on - strand, within Dsui_0490 at 492.527 kb on - strand, within Dsui_0490 at 492.541 kb on - strand, within Dsui_0490 at 492.907 kb on - strand, within Dsui_0490 at 492.927 kb on - strand, within Dsui_0490 at 492.967 kb on + strand, within Dsui_0490 at 492.977 kb on + strand, within Dsui_0490 at 493.086 kb on + strand, within Dsui_0490 at 493.238 kb on + strand, within Dsui_0490 at 493.304 kb on - strand, within Dsui_0490 at 493.335 kb on - strand, within Dsui_0490 at 493.357 kb on - strand, within Dsui_0490 at 493.358 kb on - strand, within Dsui_0490 at 493.598 kb on - strand, within Dsui_0490 at 493.627 kb on + strand, within Dsui_0490 at 493.635 kb on - strand, within Dsui_0490 at 493.650 kb on - strand, within Dsui_0490 at 493.829 kb on + strand at 493.846 kb on - strand at 493.942 kb on + strand at 494.018 kb on - strand, within Dsui_0491 at 494.085 kb on + strand, within Dsui_0491 at 494.169 kb on - strand, within Dsui_0491 at 494.208 kb on - strand, within Dsui_0491 at 494.426 kb on - strand, within Dsui_0491 at 494.495 kb on + strand at 494.500 kb on + strand, within Dsui_0491 at 494.573 kb on + strand, within Dsui_0491 at 494.593 kb on - strand, within Dsui_0491 at 494.609 kb on + strand, within Dsui_0491 at 494.609 kb on + strand, within Dsui_0491 at 494.610 kb on - strand, within Dsui_0491 at 494.715 kb on + strand, within Dsui_0491 at 494.755 kb on + strand, within Dsui_0491 at 494.800 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.855 kb on - strand, within Dsui_0491
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 491,355 - Dsui_0488 0.86 -0.8 491,357 + Dsui_0488 0.86 -2.9 491,395 + -2.0 491,436 + -1.3 491,442 - -1.7 491,568 + -0.7 491,576 - -0.4 491,576 - -0.5 491,576 - -0.9 491,577 - -0.3 491,613 - -1.0 491,615 + +0.3 491,717 - Dsui_0489 0.23 -0.9 492,008 - Dsui_0489 0.63 -1.1 492,108 - Dsui_0489 0.77 -0.7 492,196 + +0.3 492,199 - Dsui_0489 0.90 -1.6 492,204 - -0.5 492,212 + +0.3 492,237 - -0.6 492,252 - -1.3 492,261 - -0.9 492,261 - -1.6 492,261 - -2.7 492,273 + +0.3 492,273 + -2.0 492,397 - +0.3 492,416 + -0.3 492,443 + -0.4 492,522 - Dsui_0490 0.12 +0.3 492,527 - Dsui_0490 0.12 -2.3 492,541 - Dsui_0490 0.13 -1.3 492,907 - Dsui_0490 0.37 +0.3 492,927 - Dsui_0490 0.39 -0.7 492,967 + Dsui_0490 0.41 -0.5 492,977 + Dsui_0490 0.42 -1.1 493,086 + Dsui_0490 0.49 -0.9 493,238 + Dsui_0490 0.59 -0.3 493,304 - Dsui_0490 0.63 +0.3 493,335 - Dsui_0490 0.65 -1.7 493,357 - Dsui_0490 0.67 -2.0 493,358 - Dsui_0490 0.67 -0.9 493,598 - Dsui_0490 0.83 -1.3 493,627 + Dsui_0490 0.85 -0.4 493,635 - Dsui_0490 0.85 -2.7 493,650 - Dsui_0490 0.86 +0.3 493,829 + +0.2 493,846 - -0.5 493,942 + -2.3 494,018 - Dsui_0491 0.13 -0.1 494,085 + Dsui_0491 0.18 -1.2 494,169 - Dsui_0491 0.25 -0.5 494,208 - Dsui_0491 0.28 -0.4 494,426 - Dsui_0491 0.46 -1.1 494,495 + +0.3 494,500 + Dsui_0491 0.52 -1.0 494,573 + Dsui_0491 0.58 -0.7 494,593 - Dsui_0491 0.59 -0.6 494,609 + Dsui_0491 0.61 -1.7 494,609 + Dsui_0491 0.61 -0.7 494,610 - Dsui_0491 0.61 -0.6 494,715 + Dsui_0491 0.69 +0.3 494,755 + Dsui_0491 0.72 +0.3 494,800 - Dsui_0491 0.76 -0.6 494,810 - Dsui_0491 0.77 -0.6 494,810 - Dsui_0491 0.77 -1.2 494,810 - Dsui_0491 0.77 -0.4 494,855 - Dsui_0491 0.80 -2.3
Or see this region's nucleotide sequence