Strain Fitness in Dechlorosoma suillum PS around Dsui_0466

Experiment: ALP with Zinc 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0465 and Dsui_0466 overlap by 26 nucleotidesDsui_0466 and Dsui_0467 overlap by 1 nucleotides Dsui_0465: Dsui_0465 - ADP-heptose:LPS heptosyltransferase, at 471,273 to 472,451 _0465 Dsui_0466: Dsui_0466 - glycosyltransferase, at 472,426 to 473,532 _0466 Dsui_0467: Dsui_0467 - lipid A export permease/ATP-binding protein MsbA, at 473,532 to 475,286 _0467 Position (kb) 472 473 474Strain fitness (log2 ratio) -3 -2 -1 0 1at 471.439 kb on + strandat 471.683 kb on - strand, within Dsui_0465at 471.761 kb on - strand, within Dsui_0465at 471.786 kb on - strand, within Dsui_0465at 472.212 kb on - strand, within Dsui_0465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM
remove
471,439 + +0.3
471,683 - Dsui_0465 0.35 -3.1
471,761 - Dsui_0465 0.41 -2.3
471,786 - Dsui_0465 0.44 -2.7
472,212 - Dsui_0465 0.80 -2.0

Or see this region's nucleotide sequence