Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0436 and Dsui_0437 are separated by 105 nucleotides Dsui_0437 and Dsui_0438 are separated by 51 nucleotides Dsui_0438 and Dsui_0439 are separated by 45 nucleotides
Dsui_0436: Dsui_0436 - dienelactone hydrolase-like enzyme, at 443,019 to 443,903
_0436
Dsui_0437: Dsui_0437 - succinate-semialdehyde dehydrogenase, at 444,009 to 445,460
_0437
Dsui_0438: Dsui_0438 - cell wall-associated hydrolase, invasion-associated protein, at 445,512 to 446,003
_0438
Dsui_0439: Dsui_0439 - 2-nitropropane dioxygenase-like enzyme, at 446,049 to 446,996
_0439
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 443.130 kb on - strand, within Dsui_0436 at 443.135 kb on - strand, within Dsui_0436 at 443.264 kb on + strand at 443.331 kb on + strand, within Dsui_0436 at 443.340 kb on + strand, within Dsui_0436 at 443.401 kb on - strand, within Dsui_0436 at 443.469 kb on + strand, within Dsui_0436 at 443.545 kb on - strand, within Dsui_0436 at 443.729 kb on - strand, within Dsui_0436 at 443.753 kb on + strand, within Dsui_0436 at 443.753 kb on + strand, within Dsui_0436 at 443.799 kb on - strand, within Dsui_0436 at 443.799 kb on - strand, within Dsui_0436 at 443.881 kb on + strand at 444.024 kb on - strand at 444.042 kb on + strand at 444.055 kb on - strand at 444.194 kb on + strand, within Dsui_0437 at 444.262 kb on - strand, within Dsui_0437 at 444.290 kb on + strand, within Dsui_0437 at 444.450 kb on - strand, within Dsui_0437 at 444.523 kb on - strand, within Dsui_0437 at 444.523 kb on - strand, within Dsui_0437 at 444.523 kb on - strand, within Dsui_0437 at 444.603 kb on + strand, within Dsui_0437 at 444.901 kb on - strand, within Dsui_0437 at 444.925 kb on - strand, within Dsui_0437 at 444.930 kb on + strand, within Dsui_0437 at 444.962 kb on + strand at 445.084 kb on + strand at 445.092 kb on - strand, within Dsui_0437 at 445.127 kb on + strand at 445.140 kb on - strand, within Dsui_0437 at 445.173 kb on - strand, within Dsui_0437 at 445.191 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.201 kb on - strand, within Dsui_0437 at 445.247 kb on - strand, within Dsui_0437 at 445.272 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.317 kb on + strand at 445.439 kb on + strand at 445.602 kb on - strand, within Dsui_0438 at 445.715 kb on - strand, within Dsui_0438 at 445.727 kb on + strand, within Dsui_0438 at 445.833 kb on + strand, within Dsui_0438 at 445.973 kb on + strand at 445.973 kb on + strand at 445.973 kb on + strand at 445.988 kb on + strand at 446.080 kb on - strand at 446.130 kb on - strand at 446.150 kb on + strand, within Dsui_0439 at 446.201 kb on + strand, within Dsui_0439 at 446.247 kb on + strand, within Dsui_0439 at 446.278 kb on - strand at 446.331 kb on - strand, within Dsui_0439 at 446.362 kb on - strand at 446.372 kb on + strand, within Dsui_0439 at 446.380 kb on - strand, within Dsui_0439
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 443,130 - Dsui_0436 0.13 +0.3 443,135 - Dsui_0436 0.13 -0.7 443,264 + +0.3 443,331 + Dsui_0436 0.35 -1.7 443,340 + Dsui_0436 0.36 +0.3 443,401 - Dsui_0436 0.43 -0.7 443,469 + Dsui_0436 0.51 +0.3 443,545 - Dsui_0436 0.59 +0.3 443,729 - Dsui_0436 0.80 -2.7 443,753 + Dsui_0436 0.83 -0.9 443,753 + Dsui_0436 0.83 +0.3 443,799 - Dsui_0436 0.88 +0.3 443,799 - Dsui_0436 0.88 +0.3 443,881 + +0.3 444,024 - -0.7 444,042 + -0.7 444,055 - -0.6 444,194 + Dsui_0437 0.13 -1.3 444,262 - Dsui_0437 0.17 -0.3 444,290 + Dsui_0437 0.19 -2.5 444,450 - Dsui_0437 0.30 -0.9 444,523 - Dsui_0437 0.35 -0.3 444,523 - Dsui_0437 0.35 -0.9 444,523 - Dsui_0437 0.35 -0.6 444,603 + Dsui_0437 0.41 -2.7 444,901 - Dsui_0437 0.61 -1.3 444,925 - Dsui_0437 0.63 -1.1 444,930 + Dsui_0437 0.63 -2.0 444,962 + +0.3 445,084 + -0.7 445,092 - Dsui_0437 0.75 -0.4 445,127 + +0.3 445,140 - Dsui_0437 0.78 -0.9 445,173 - Dsui_0437 0.80 -0.4 445,191 - Dsui_0437 0.81 -1.2 445,201 - Dsui_0437 0.82 -0.3 445,201 - Dsui_0437 0.82 -1.0 445,247 - Dsui_0437 0.85 -1.5 445,272 + +0.3 445,317 + -1.3 445,317 + -2.7 445,317 + -0.7 445,439 + -3.3 445,602 - Dsui_0438 0.18 +0.3 445,715 - Dsui_0438 0.41 -1.3 445,727 + Dsui_0438 0.44 -0.9 445,833 + Dsui_0438 0.65 -0.6 445,973 + -0.5 445,973 + -0.1 445,973 + -0.2 445,988 + -0.0 446,080 - +0.3 446,130 - -1.3 446,150 + Dsui_0439 0.11 -0.2 446,201 + Dsui_0439 0.16 -0.9 446,247 + Dsui_0439 0.21 -0.1 446,278 - +0.3 446,331 - Dsui_0439 0.30 -1.3 446,362 - +0.3 446,372 + Dsui_0439 0.34 -0.3 446,380 - Dsui_0439 0.35 -1.7
Or see this region's nucleotide sequence