Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0374 and Dsui_0375 are separated by 49 nucleotides Dsui_0375 and Dsui_0376 are separated by 26 nucleotides Dsui_0376 and Dsui_0377 are separated by 64 nucleotides Dsui_0377 and Dsui_0378 are separated by 172 nucleotides Dsui_0378 and Dsui_0379 are separated by 257 nucleotides
Dsui_0374: Dsui_0374 - translation elongation factor TU, at 372,607 to 373,797
_0374
Dsui_0375: Dsui_0375 - tRNA-Thr, at 373,847 to 373,921
_0375
Dsui_0376: Dsui_0376 - tRNA-Gly, at 373,948 to 374,021
_0376
Dsui_0377: Dsui_0377 - tRNA-Tyr, at 374,086 to 374,170
_0377
Dsui_0378: Dsui_0378 - FAD/FMN-dependent dehydrogenase, at 374,343 to 375,740
_0378
Dsui_0379: Dsui_0379 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 375,998 to 379,549
_0379
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 374.217 kb on - strand at 374.312 kb on - strand at 374.327 kb on + strand at 374.340 kb on + strand at 374.378 kb on + strand at 374.378 kb on + strand at 374.378 kb on + strand at 374.386 kb on - strand at 374.386 kb on - strand at 374.477 kb on + strand at 374.589 kb on + strand, within Dsui_0378 at 374.597 kb on - strand, within Dsui_0378 at 374.804 kb on + strand, within Dsui_0378 at 374.848 kb on + strand, within Dsui_0378 at 374.848 kb on + strand, within Dsui_0378 at 374.944 kb on + strand, within Dsui_0378 at 374.982 kb on + strand, within Dsui_0378 at 374.988 kb on - strand, within Dsui_0378 at 375.070 kb on - strand, within Dsui_0378 at 375.070 kb on - strand, within Dsui_0378 at 375.078 kb on - strand, within Dsui_0378 at 375.080 kb on + strand, within Dsui_0378 at 375.156 kb on - strand, within Dsui_0378 at 375.197 kb on + strand, within Dsui_0378 at 375.266 kb on + strand, within Dsui_0378 at 375.341 kb on + strand, within Dsui_0378 at 375.355 kb on - strand, within Dsui_0378 at 375.388 kb on + strand, within Dsui_0378 at 375.466 kb on - strand, within Dsui_0378 at 375.604 kb on + strand at 375.631 kb on - strand at 375.668 kb on - strand at 375.673 kb on + strand at 375.674 kb on + strand at 375.681 kb on - strand at 375.684 kb on + strand at 375.692 kb on - strand at 375.694 kb on + strand at 375.694 kb on + strand at 375.748 kb on + strand at 375.841 kb on + strand at 375.894 kb on + strand at 375.997 kb on - strand at 376.030 kb on + strand at 376.057 kb on + strand at 376.062 kb on - strand at 376.067 kb on + strand at 376.103 kb on - strand at 376.150 kb on + strand at 376.150 kb on + strand at 376.150 kb on - strand at 376.204 kb on + strand at 376.207 kb on - strand at 376.208 kb on - strand at 376.212 kb on - strand at 376.214 kb on - strand at 376.231 kb on - strand at 376.268 kb on - strand at 376.336 kb on + strand at 376.387 kb on + strand, within Dsui_0379 at 376.537 kb on + strand at 376.550 kb on + strand, within Dsui_0379 at 376.550 kb on + strand, within Dsui_0379 at 376.608 kb on + strand, within Dsui_0379 at 376.616 kb on - strand, within Dsui_0379 at 376.640 kb on + strand, within Dsui_0379 at 376.666 kb on - strand, within Dsui_0379 at 376.684 kb on - strand, within Dsui_0379 at 376.684 kb on - strand, within Dsui_0379
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 374,217 - -0.0 374,312 - -2.0 374,327 + +0.4 374,340 + -1.0 374,378 + -0.6 374,378 + -2.5 374,378 + -0.6 374,386 - +0.4 374,386 - +0.4 374,477 + -2.0 374,589 + Dsui_0378 0.18 -1.2 374,597 - Dsui_0378 0.18 -1.2 374,804 + Dsui_0378 0.33 -0.1 374,848 + Dsui_0378 0.36 +1.9 374,848 + Dsui_0378 0.36 +0.2 374,944 + Dsui_0378 0.43 -1.6 374,982 + Dsui_0378 0.46 -0.6 374,988 - Dsui_0378 0.46 -1.6 375,070 - Dsui_0378 0.52 +0.4 375,070 - Dsui_0378 0.52 +0.4 375,078 - Dsui_0378 0.53 +0.4 375,080 + Dsui_0378 0.53 -2.5 375,156 - Dsui_0378 0.58 -0.6 375,197 + Dsui_0378 0.61 -0.6 375,266 + Dsui_0378 0.66 -0.3 375,341 + Dsui_0378 0.71 -1.1 375,355 - Dsui_0378 0.72 -1.2 375,388 + Dsui_0378 0.75 -1.5 375,466 - Dsui_0378 0.80 +0.4 375,604 + -1.4 375,631 - -0.6 375,668 - -1.6 375,673 + +0.1 375,674 + -0.4 375,681 - +0.4 375,684 + -0.4 375,692 - +0.4 375,694 + -0.2 375,694 + -0.9 375,748 + -0.0 375,841 + +0.4 375,894 + -1.8 375,997 - -1.2 376,030 + -0.5 376,057 + -2.2 376,062 - +0.4 376,067 + -3.0 376,103 - +0.4 376,150 + -1.2 376,150 + -0.6 376,150 - +0.4 376,204 + -1.2 376,207 - +0.4 376,208 - -0.6 376,212 - -0.6 376,214 - -1.0 376,231 - +0.4 376,268 - +0.4 376,336 + -0.6 376,387 + Dsui_0379 0.11 +0.4 376,537 + +0.4 376,550 + Dsui_0379 0.16 +0.4 376,550 + Dsui_0379 0.16 -0.6 376,608 + Dsui_0379 0.17 -0.6 376,616 - Dsui_0379 0.17 +0.4 376,640 + Dsui_0379 0.18 +0.4 376,666 - Dsui_0379 0.19 -1.2 376,684 - Dsui_0379 0.19 +0.4 376,684 - Dsui_0379 0.19 +0.4
Or see this region's nucleotide sequence