Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0117 and Dsui_0118 are separated by 153 nucleotides Dsui_0118 and Dsui_0119 are separated by 31 nucleotides Dsui_0119 and Dsui_0120 are separated by 1 nucleotides
Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610
_0117
Dsui_0118: Dsui_0118 - monothiol glutaredoxin, Grx4 family, at 116,764 to 117,084
_0118
Dsui_0119: Dsui_0119 - protein-(glutamine-N5) methyltransferase, release factor-specific, at 117,116 to 117,961
_0119
Dsui_0120: Dsui_0120 - peptide chain release factor 1, at 117,963 to 119,060
_0120
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 115.766 kb on + strand, within Dsui_0117 at 115.783 kb on + strand, within Dsui_0117 at 115.789 kb on + strand, within Dsui_0117 at 115.794 kb on + strand, within Dsui_0117 at 115.804 kb on + strand, within Dsui_0117 at 115.812 kb on - strand, within Dsui_0117 at 115.829 kb on - strand, within Dsui_0117 at 115.835 kb on + strand, within Dsui_0117 at 115.874 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.904 kb on + strand, within Dsui_0117 at 115.911 kb on + strand, within Dsui_0117 at 115.940 kb on + strand, within Dsui_0117 at 115.982 kb on - strand, within Dsui_0117 at 116.043 kb on + strand, within Dsui_0117 at 116.125 kb on + strand at 116.127 kb on + strand at 116.137 kb on - strand, within Dsui_0117 at 116.146 kb on + strand, within Dsui_0117 at 116.207 kb on + strand, within Dsui_0117 at 116.256 kb on - strand, within Dsui_0117 at 116.281 kb on - strand, within Dsui_0117 at 116.290 kb on - strand, within Dsui_0117 at 116.329 kb on - strand, within Dsui_0117 at 116.331 kb on + strand, within Dsui_0117 at 116.339 kb on - strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.379 kb on + strand, within Dsui_0117 at 116.387 kb on - strand, within Dsui_0117 at 116.387 kb on - strand, within Dsui_0117 at 116.509 kb on + strand at 116.509 kb on + strand at 116.592 kb on + strand at 116.592 kb on + strand at 116.759 kb on - strand at 116.759 kb on - strand at 116.762 kb on + strand at 116.762 kb on + strand at 116.769 kb on - strand at 116.775 kb on - strand at 116.870 kb on + strand, within Dsui_0118 at 116.922 kb on - strand, within Dsui_0118 at 116.939 kb on + strand, within Dsui_0118 at 116.957 kb on - strand, within Dsui_0118 at 116.970 kb on - strand, within Dsui_0118 at 116.974 kb on - strand, within Dsui_0118 at 117.036 kb on - strand, within Dsui_0118 at 117.069 kb on + strand at 117.094 kb on - strand at 117.931 kb on - strand at 117.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 115,766 + Dsui_0117 0.49 -0.6 115,783 + Dsui_0117 0.50 -1.2 115,789 + Dsui_0117 0.50 -2.0 115,794 + Dsui_0117 0.50 -1.2 115,804 + Dsui_0117 0.51 -0.6 115,812 - Dsui_0117 0.51 -1.0 115,829 - Dsui_0117 0.52 -1.2 115,835 + Dsui_0117 0.53 -1.2 115,874 + Dsui_0117 0.55 -0.6 115,904 + Dsui_0117 0.57 -1.2 115,904 + Dsui_0117 0.57 +0.4 115,911 + Dsui_0117 0.57 -3.0 115,940 + Dsui_0117 0.59 -2.5 115,982 - Dsui_0117 0.62 -1.2 116,043 + Dsui_0117 0.65 +0.4 116,125 + -0.6 116,127 + +0.4 116,137 - Dsui_0117 0.71 -1.6 116,146 + Dsui_0117 0.72 -0.6 116,207 + Dsui_0117 0.75 -0.6 116,256 - Dsui_0117 0.78 -3.0 116,281 - Dsui_0117 0.80 -0.8 116,290 - Dsui_0117 0.80 -3.3 116,329 - Dsui_0117 0.83 -1.6 116,331 + Dsui_0117 0.83 +0.4 116,339 - Dsui_0117 0.83 -1.2 116,379 + Dsui_0117 0.86 +0.4 116,379 + Dsui_0117 0.86 +0.4 116,379 + Dsui_0117 0.86 +0.4 116,387 - Dsui_0117 0.86 -2.5 116,387 - Dsui_0117 0.86 -3.3 116,509 + -2.0 116,509 + -2.8 116,592 + -2.0 116,592 + +0.4 116,759 - -0.1 116,759 - -0.1 116,762 + -0.6 116,762 + -1.2 116,769 - +0.1 116,775 - -0.2 116,870 + Dsui_0118 0.33 -1.2 116,922 - Dsui_0118 0.49 -0.2 116,939 + Dsui_0118 0.55 -1.2 116,957 - Dsui_0118 0.60 -1.0 116,970 - Dsui_0118 0.64 -0.1 116,974 - Dsui_0118 0.65 +0.2 117,036 - Dsui_0118 0.85 -0.1 117,069 + -1.6 117,094 - -0.1 117,931 - -0.1 117,939 + -0.6
Or see this region's nucleotide sequence