Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0114 and Dsui_0115 are separated by 203 nucleotides Dsui_0115 and Dsui_0116 are separated by 116 nucleotides Dsui_0116 and Dsui_0117 are separated by 42 nucleotides
Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750
_0114
Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448
_0115
Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924
_0116
Dsui_0117: Dsui_0117 - methyl-accepting chemotaxis protein, at 114,967 to 116,610
_0117
Position (kb)
113
114
115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 112.966 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 112.990 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 113.030 kb on + strand, within Dsui_0114 at 113.115 kb on + strand at 113.146 kb on + strand at 113.173 kb on - strand, within Dsui_0114 at 113.187 kb on + strand, within Dsui_0114 at 113.255 kb on + strand at 113.287 kb on - strand, within Dsui_0114 at 113.321 kb on + strand, within Dsui_0114 at 113.336 kb on - strand, within Dsui_0114 at 113.383 kb on + strand at 113.427 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.443 kb on - strand, within Dsui_0114 at 113.446 kb on + strand, within Dsui_0114 at 113.457 kb on + strand, within Dsui_0114 at 113.462 kb on + strand, within Dsui_0114 at 113.497 kb on - strand, within Dsui_0114 at 113.533 kb on + strand at 113.543 kb on + strand, within Dsui_0114 at 113.636 kb on + strand at 113.644 kb on - strand at 113.685 kb on - strand at 113.726 kb on - strand at 113.751 kb on - strand at 113.795 kb on - strand at 113.805 kb on - strand at 113.896 kb on + strand at 113.896 kb on + strand at 113.904 kb on - strand at 113.904 kb on - strand at 113.985 kb on - strand at 113.999 kb on + strand at 114.006 kb on - strand, within Dsui_0115 at 114.030 kb on - strand, within Dsui_0115 at 114.051 kb on - strand, within Dsui_0115 at 114.062 kb on + strand, within Dsui_0115 at 114.121 kb on + strand, within Dsui_0115 at 114.185 kb on - strand, within Dsui_0115 at 114.206 kb on - strand, within Dsui_0115 at 114.285 kb on + strand, within Dsui_0115 at 114.293 kb on - strand, within Dsui_0115 at 114.331 kb on - strand, within Dsui_0115 at 114.421 kb on + strand at 114.444 kb on - strand at 114.496 kb on - strand at 114.499 kb on + strand at 114.514 kb on + strand at 114.562 kb on + strand at 114.615 kb on - strand at 114.621 kb on + strand at 114.775 kb on + strand, within Dsui_0116 at 114.775 kb on + strand, within Dsui_0116 at 114.826 kb on - strand, within Dsui_0116 at 114.853 kb on + strand, within Dsui_0116 at 114.866 kb on - strand at 114.885 kb on - strand, within Dsui_0116 at 114.889 kb on - strand at 114.900 kb on - strand at 115.004 kb on + strand at 115.012 kb on - strand at 115.016 kb on + strand at 115.024 kb on - strand at 115.086 kb on + strand at 115.142 kb on - strand, within Dsui_0117 at 115.185 kb on + strand, within Dsui_0117 at 115.256 kb on - strand, within Dsui_0117 at 115.369 kb on - strand, within Dsui_0117 at 115.411 kb on + strand, within Dsui_0117 at 115.419 kb on - strand, within Dsui_0117
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 112,966 + +0.4 112,990 + Dsui_0114 0.47 +0.4 112,990 + +0.4 112,990 + Dsui_0114 0.47 -2.0 113,030 + Dsui_0114 0.50 -1.2 113,115 + +0.4 113,146 + +0.4 113,173 - Dsui_0114 0.60 +0.4 113,187 + Dsui_0114 0.61 -0.0 113,255 + -0.6 113,287 - Dsui_0114 0.68 -1.2 113,321 + Dsui_0114 0.70 +0.4 113,336 - Dsui_0114 0.71 -1.2 113,383 + +0.4 113,427 - Dsui_0114 0.78 +0.4 113,437 - Dsui_0114 0.78 -1.6 113,437 - Dsui_0114 0.78 +0.4 113,443 - Dsui_0114 0.79 -0.6 113,446 + Dsui_0114 0.79 +0.4 113,457 + Dsui_0114 0.80 -0.6 113,462 + Dsui_0114 0.80 -2.0 113,497 - Dsui_0114 0.82 -2.8 113,533 + +0.4 113,543 + Dsui_0114 0.86 -2.0 113,636 + -0.6 113,644 - -1.2 113,685 - -0.6 113,726 - -2.2 113,751 - +1.4 113,795 - -1.3 113,805 - -0.9 113,896 + +0.4 113,896 + +0.4 113,904 - -3.1 113,904 - -1.8 113,985 - -0.2 113,999 + +0.4 114,006 - Dsui_0115 0.11 -1.0 114,030 - Dsui_0115 0.15 -0.3 114,051 - Dsui_0115 0.20 -0.5 114,062 + Dsui_0115 0.22 -0.6 114,121 + Dsui_0115 0.34 -0.6 114,185 - Dsui_0115 0.47 -0.4 114,206 - Dsui_0115 0.51 -0.4 114,285 + Dsui_0115 0.67 -1.6 114,293 - Dsui_0115 0.68 -0.4 114,331 - Dsui_0115 0.76 -0.4 114,421 + -1.2 114,444 - +0.7 114,496 - -0.6 114,499 + -1.6 114,514 + +0.4 114,562 + +0.4 114,615 - -1.6 114,621 + +0.4 114,775 + Dsui_0116 0.58 +0.4 114,775 + Dsui_0116 0.58 +0.4 114,826 - Dsui_0116 0.72 -1.2 114,853 + Dsui_0116 0.80 -3.5 114,866 - +0.4 114,885 - Dsui_0116 0.89 +0.4 114,889 - -1.2 114,900 - -0.6 115,004 + -0.6 115,012 - -2.6 115,016 + -1.2 115,024 - -2.0 115,086 + +0.4 115,142 - Dsui_0117 0.11 -1.2 115,185 + Dsui_0117 0.13 -0.4 115,256 - Dsui_0117 0.18 -1.2 115,369 - Dsui_0117 0.24 +0.4 115,411 + Dsui_0117 0.27 +0.4 115,419 - Dsui_0117 0.27 +0.4
Or see this region's nucleotide sequence