Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0111 and Dsui_0112 are separated by 145 nucleotides Dsui_0112 and Dsui_0113 are separated by 21 nucleotides Dsui_0113 and Dsui_0114 are separated by 13 nucleotides
Dsui_0111: Dsui_0111 - argininosuccinate lyase, at 109,189 to 110,574
_0111
Dsui_0112: Dsui_0112 - serine/threonine protein kinase, at 110,720 to 112,012
_0112
Dsui_0113: Dsui_0113 - hypothetical protein, at 112,034 to 112,297
_0113
Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750
_0114
Position (kb)
110
111
112
113 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 110.564 kb on - strand at 110.591 kb on + strand at 110.599 kb on - strand at 110.643 kb on - strand at 110.643 kb on - strand at 110.651 kb on + strand at 110.656 kb on + strand at 110.688 kb on - strand at 110.701 kb on + strand at 110.835 kb on + strand at 110.863 kb on + strand, within Dsui_0112 at 110.866 kb on - strand, within Dsui_0112 at 110.922 kb on - strand at 110.933 kb on + strand, within Dsui_0112 at 111.025 kb on + strand, within Dsui_0112 at 111.045 kb on + strand, within Dsui_0112 at 111.048 kb on + strand, within Dsui_0112 at 111.148 kb on - strand, within Dsui_0112 at 111.171 kb on - strand, within Dsui_0112 at 111.262 kb on - strand, within Dsui_0112 at 111.274 kb on + strand, within Dsui_0112 at 111.335 kb on - strand, within Dsui_0112 at 111.440 kb on - strand, within Dsui_0112 at 111.472 kb on + strand, within Dsui_0112 at 111.480 kb on - strand, within Dsui_0112 at 111.504 kb on - strand, within Dsui_0112 at 111.507 kb on + strand, within Dsui_0112 at 111.515 kb on - strand, within Dsui_0112 at 111.532 kb on + strand, within Dsui_0112 at 111.540 kb on - strand at 111.654 kb on - strand at 111.656 kb on + strand, within Dsui_0112 at 111.664 kb on - strand, within Dsui_0112 at 111.738 kb on - strand, within Dsui_0112 at 111.753 kb on + strand, within Dsui_0112 at 111.866 kb on + strand, within Dsui_0112 at 111.867 kb on + strand, within Dsui_0112 at 111.877 kb on + strand, within Dsui_0112 at 111.885 kb on - strand at 111.892 kb on + strand at 111.905 kb on + strand at 111.910 kb on + strand at 111.988 kb on - strand at 112.040 kb on - strand at 112.052 kb on - strand at 112.059 kb on + strand at 112.060 kb on - strand at 112.228 kb on + strand, within Dsui_0113 at 112.236 kb on - strand, within Dsui_0113 at 112.268 kb on - strand at 112.299 kb on + strand at 112.300 kb on - strand at 112.300 kb on - strand at 112.300 kb on - strand at 112.385 kb on + strand at 112.389 kb on - strand at 112.431 kb on + strand at 112.434 kb on - strand at 112.562 kb on + strand, within Dsui_0114 at 112.562 kb on + strand, within Dsui_0114 at 112.570 kb on - strand, within Dsui_0114 at 112.601 kb on - strand at 112.613 kb on + strand, within Dsui_0114 at 112.620 kb on + strand, within Dsui_0114 at 112.623 kb on - strand, within Dsui_0114 at 112.740 kb on + strand at 112.748 kb on - strand, within Dsui_0114 at 112.763 kb on - strand, within Dsui_0114 at 112.886 kb on - strand at 112.913 kb on - strand, within Dsui_0114 at 112.918 kb on - strand, within Dsui_0114 at 112.928 kb on - strand, within Dsui_0114 at 112.935 kb on + strand, within Dsui_0114 at 112.941 kb on + strand at 112.949 kb on - strand, within Dsui_0114 at 112.966 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 112.990 kb on + strand at 112.990 kb on + strand, within Dsui_0114
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 110,564 - -0.6 110,591 + -0.2 110,599 - -0.6 110,643 - +0.4 110,643 - -1.6 110,651 + -0.2 110,656 + -0.4 110,688 - -1.2 110,701 + -0.5 110,835 + -1.3 110,863 + Dsui_0112 0.11 -1.5 110,866 - Dsui_0112 0.11 -0.6 110,922 - +0.4 110,933 + Dsui_0112 0.16 -0.9 111,025 + Dsui_0112 0.24 -0.6 111,045 + Dsui_0112 0.25 -0.6 111,048 + Dsui_0112 0.25 -1.6 111,148 - Dsui_0112 0.33 -0.6 111,171 - Dsui_0112 0.35 -2.2 111,262 - Dsui_0112 0.42 -2.6 111,274 + Dsui_0112 0.43 -1.2 111,335 - Dsui_0112 0.48 -0.6 111,440 - Dsui_0112 0.56 -1.2 111,472 + Dsui_0112 0.58 -0.6 111,480 - Dsui_0112 0.59 -2.6 111,504 - Dsui_0112 0.61 -2.8 111,507 + Dsui_0112 0.61 -1.0 111,515 - Dsui_0112 0.61 -0.6 111,532 + Dsui_0112 0.63 -0.9 111,540 - -0.6 111,654 - -0.6 111,656 + Dsui_0112 0.72 -0.3 111,664 - Dsui_0112 0.73 -0.6 111,738 - Dsui_0112 0.79 -3.1 111,753 + Dsui_0112 0.80 -1.2 111,866 + Dsui_0112 0.89 -2.6 111,867 + Dsui_0112 0.89 -0.6 111,877 + Dsui_0112 0.89 +0.4 111,885 - -0.6 111,892 + -0.6 111,905 + -0.1 111,910 + -0.5 111,988 - +0.4 112,040 - -1.2 112,052 - -1.2 112,059 + -1.2 112,060 - +0.4 112,228 + Dsui_0113 0.73 -1.6 112,236 - Dsui_0113 0.77 -0.6 112,268 - -0.6 112,299 + -0.6 112,300 - -0.6 112,300 - -2.5 112,300 - +0.4 112,385 + -1.6 112,389 - +1.4 112,431 + +0.4 112,434 - -0.6 112,562 + Dsui_0114 0.17 -1.2 112,562 + Dsui_0114 0.17 -2.6 112,570 - Dsui_0114 0.18 -0.6 112,601 - +0.4 112,613 + Dsui_0114 0.21 +0.4 112,620 + Dsui_0114 0.21 -2.6 112,623 - Dsui_0114 0.22 -1.2 112,740 + +0.4 112,748 - Dsui_0114 0.30 -2.0 112,763 - Dsui_0114 0.31 -1.2 112,886 - +0.4 112,913 - Dsui_0114 0.42 -0.6 112,918 - Dsui_0114 0.42 -0.6 112,928 - Dsui_0114 0.43 +0.4 112,935 + Dsui_0114 0.43 +0.4 112,941 + +0.4 112,949 - Dsui_0114 0.44 -1.2 112,966 + +0.4 112,990 + Dsui_0114 0.47 +0.4 112,990 + +0.4 112,990 + Dsui_0114 0.47 -2.0
Or see this region's nucleotide sequence