Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0035 and Dsui_0036 are separated by 115 nucleotides Dsui_0036 and Dsui_0037 are separated by 86 nucleotides
Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854
_0035
Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542
_0036
Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840
_0037
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 32.118 kb on - strand, within Dsui_0035 at 32.129 kb on - strand, within Dsui_0035 at 32.187 kb on - strand, within Dsui_0035 at 32.206 kb on + strand, within Dsui_0035 at 32.207 kb on + strand at 32.210 kb on - strand, within Dsui_0035 at 32.210 kb on - strand, within Dsui_0035 at 32.215 kb on - strand at 32.215 kb on - strand, within Dsui_0035 at 32.215 kb on - strand, within Dsui_0035 at 32.230 kb on - strand, within Dsui_0035 at 32.280 kb on - strand, within Dsui_0035 at 32.282 kb on + strand, within Dsui_0035 at 32.332 kb on - strand, within Dsui_0035 at 32.433 kb on + strand at 32.477 kb on + strand at 32.486 kb on + strand, within Dsui_0035 at 32.618 kb on - strand, within Dsui_0035 at 32.660 kb on + strand at 32.671 kb on + strand at 32.671 kb on + strand at 32.758 kb on - strand at 32.834 kb on - strand at 33.188 kb on + strand, within Dsui_0036 at 33.188 kb on + strand, within Dsui_0036 at 33.261 kb on - strand, within Dsui_0036 at 33.273 kb on - strand, within Dsui_0036 at 33.332 kb on + strand, within Dsui_0036 at 33.353 kb on - strand, within Dsui_0036 at 33.551 kb on + strand at 33.559 kb on - strand at 33.671 kb on + strand at 33.715 kb on + strand at 33.786 kb on - strand, within Dsui_0037 at 33.851 kb on + strand at 33.871 kb on + strand, within Dsui_0037 at 33.895 kb on + strand at 33.918 kb on + strand, within Dsui_0037 at 33.930 kb on - strand, within Dsui_0037 at 33.962 kb on - strand, within Dsui_0037 at 34.171 kb on - strand, within Dsui_0037 at 34.182 kb on + strand, within Dsui_0037 at 34.190 kb on + strand, within Dsui_0037 at 34.225 kb on - strand, within Dsui_0037 at 34.225 kb on - strand, within Dsui_0037 at 34.237 kb on - strand, within Dsui_0037 at 34.238 kb on - strand, within Dsui_0037 at 34.242 kb on + strand, within Dsui_0037 at 34.275 kb on + strand, within Dsui_0037 at 34.297 kb on + strand, within Dsui_0037 at 34.306 kb on - strand at 34.428 kb on + strand, within Dsui_0037 at 34.436 kb on - strand, within Dsui_0037 at 34.461 kb on - strand, within Dsui_0037 at 34.476 kb on - strand, within Dsui_0037 at 34.482 kb on - strand, within Dsui_0037
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 32,118 - Dsui_0035 0.30 -1.6 32,129 - Dsui_0035 0.31 -0.8 32,187 - Dsui_0035 0.36 -1.2 32,206 + Dsui_0035 0.38 -1.2 32,207 + +0.4 32,210 - Dsui_0035 0.39 -1.5 32,210 - Dsui_0035 0.39 +0.6 32,215 - -2.2 32,215 - Dsui_0035 0.39 -2.5 32,215 - Dsui_0035 0.39 -1.2 32,230 - Dsui_0035 0.40 -2.2 32,280 - Dsui_0035 0.45 -1.8 32,282 + Dsui_0035 0.45 -2.2 32,332 - Dsui_0035 0.50 -0.8 32,433 + +0.4 32,477 + +0.4 32,486 + Dsui_0035 0.65 -0.6 32,618 - Dsui_0035 0.77 -3.6 32,660 + -1.6 32,671 + +0.4 32,671 + -1.6 32,758 - +0.4 32,834 - -3.0 33,188 + Dsui_0036 0.38 -1.6 33,188 + Dsui_0036 0.38 -0.8 33,261 - Dsui_0036 0.51 -1.2 33,273 - Dsui_0036 0.53 +0.4 33,332 + Dsui_0036 0.63 -1.6 33,353 - Dsui_0036 0.67 -1.5 33,551 + +0.4 33,559 - -0.6 33,671 + -0.6 33,715 + +0.4 33,786 - Dsui_0037 0.13 -2.0 33,851 + +0.4 33,871 + Dsui_0037 0.20 -1.8 33,895 + +0.4 33,918 + Dsui_0037 0.24 -0.6 33,930 - Dsui_0037 0.25 -1.5 33,962 - Dsui_0037 0.27 -2.0 34,171 - Dsui_0037 0.45 -2.2 34,182 + Dsui_0037 0.46 -3.5 34,190 + Dsui_0037 0.46 -2.5 34,225 - Dsui_0037 0.49 +0.4 34,225 - Dsui_0037 0.49 +0.4 34,237 - Dsui_0037 0.50 -0.6 34,238 - Dsui_0037 0.50 -2.5 34,242 + Dsui_0037 0.51 -1.6 34,275 + Dsui_0037 0.53 -1.6 34,297 + Dsui_0037 0.55 -0.6 34,306 - +1.4 34,428 + Dsui_0037 0.66 -1.2 34,436 - Dsui_0037 0.67 +0.4 34,461 - Dsui_0037 0.69 -0.6 34,476 - Dsui_0037 0.70 -2.0 34,482 - Dsui_0037 0.70 -0.3
Or see this region's nucleotide sequence