Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0001 and Dsui_0002 are separated by 67 nucleotides Dsui_0002 and Dsui_0003 are separated by 80 nucleotides
Dsui_0001: Dsui_0001 - aminodeoxychorismate synthase, component I, at 103 to 1,923
_0001
Dsui_0002: Dsui_0002 - putative redox protein, regulator of disulfide bond formation, at 1,991 to 2,218
_0002
Dsui_0003: Dsui_0003 - putative Zn-dependent protease, at 2,299 to 3,786
_0003
Position (kb)
0
1
2 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 0.084 kb on + strand at 0.089 kb on + strand at 0.137 kb on - strand at 0.152 kb on - strand at 0.178 kb on - strand at 0.178 kb on - strand at 0.385 kb on - strand, within Dsui_0001 at 0.423 kb on - strand, within Dsui_0001 at 0.579 kb on - strand, within Dsui_0001 at 0.645 kb on - strand, within Dsui_0001 at 0.710 kb on + strand at 0.749 kb on + strand, within Dsui_0001 at 0.857 kb on - strand, within Dsui_0001 at 0.857 kb on - strand, within Dsui_0001 at 0.919 kb on + strand, within Dsui_0001 at 1.018 kb on + strand at 1.056 kb on + strand at 1.360 kb on + strand, within Dsui_0001 at 1.368 kb on - strand, within Dsui_0001 at 1.488 kb on - strand, within Dsui_0001 at 1.514 kb on + strand, within Dsui_0001 at 1.613 kb on + strand, within Dsui_0001 at 1.621 kb on - strand, within Dsui_0001 at 1.810 kb on + strand at 1.823 kb on - strand at 1.846 kb on - strand at 1.846 kb on - strand at 1.894 kb on - strand at 2.403 kb on - strand at 2.450 kb on - strand, within Dsui_0003 at 2.534 kb on - strand, within Dsui_0003 at 2.548 kb on - strand, within Dsui_0003 at 2.572 kb on - strand, within Dsui_0003 at 2.577 kb on - strand, within Dsui_0003
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 84 + -0.6 89 + +0.4 137 - -0.7 152 - +1.7 178 - -0.5 178 - -0.2 385 - Dsui_0001 0.15 -0.5 423 - Dsui_0001 0.18 -0.4 579 - Dsui_0001 0.26 -0.7 645 - Dsui_0001 0.30 -0.7 710 + +0.4 749 + Dsui_0001 0.35 -1.6 857 - Dsui_0001 0.41 -0.2 857 - Dsui_0001 0.41 -0.6 919 + Dsui_0001 0.45 -1.2 1,018 + +0.4 1,056 + +0.4 1,360 + Dsui_0001 0.69 -1.2 1,368 - Dsui_0001 0.69 -0.4 1,488 - Dsui_0001 0.76 -1.2 1,514 + Dsui_0001 0.77 -2.2 1,613 + Dsui_0001 0.83 -2.0 1,621 - Dsui_0001 0.83 -0.2 1,810 + +0.4 1,823 - -0.7 1,846 - -1.3 1,846 - -0.4 1,894 - -1.3 2,403 - -3.9 2,450 - Dsui_0003 0.10 -2.5 2,534 - Dsui_0003 0.16 -4.0 2,548 - Dsui_0003 0.17 -2.8 2,572 - Dsui_0003 0.18 -5.4 2,577 - Dsui_0003 0.19 -3.7
Or see this region's nucleotide sequence