Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23415 and AO353_23420 are separated by 10 nucleotides AO353_23420 and AO353_23425 are separated by 37 nucleotides AO353_23425 and AO353_23430 are separated by 281 nucleotides AO353_23430 and AO353_23435 are separated by 2 nucleotides
AO353_23415: AO353_23415 - lysine transporter LysE, at 5,129,993 to 5,130,580
_23415
AO353_23420: AO353_23420 - AraC family transcriptional regulator, at 5,130,591 to 5,131,424
_23420
AO353_23425: AO353_23425 - 3-demethylubiquinone-9 3-methyltransferase, at 5,131,462 to 5,131,965
_23425
AO353_23430: AO353_23430 - (2Fe-2S)-binding protein, at 5,132,247 to 5,132,708
_23430
AO353_23435: AO353_23435 - twin-arginine translocation pathway signal protein, at 5,132,711 to 5,134,879
_23435
Position (kb) 5131
5132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5130.468 kb on - strand, within AO353_23415 at 5130.491 kb on + strand, within AO353_23415 at 5130.524 kb on - strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.578 kb on + strand at 5130.579 kb on - strand at 5130.868 kb on + strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5130.869 kb on - strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.005 kb on + strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.006 kb on - strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.012 kb on + strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.013 kb on - strand, within AO353_23420 at 5131.031 kb on + strand, within AO353_23420 at 5131.032 kb on - strand, within AO353_23420 at 5131.130 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.138 kb on + strand, within AO353_23420 at 5131.139 kb on - strand, within AO353_23420 at 5131.139 kb on - strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.255 kb on + strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.256 kb on - strand, within AO353_23420 at 5131.316 kb on - strand, within AO353_23420 at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.460 kb on + strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.461 kb on - strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.463 kb on + strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.464 kb on - strand at 5131.735 kb on - strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.895 kb on + strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.896 kb on - strand, within AO353_23425 at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5131.999 kb on + strand at 5132.000 kb on - strand at 5132.000 kb on - strand at 5132.000 kb on - strand at 5132.003 kb on - strand at 5132.007 kb on + strand at 5132.007 kb on + strand at 5132.007 kb on + strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.008 kb on - strand at 5132.032 kb on - strand at 5132.058 kb on + strand at 5132.058 kb on + strand at 5132.058 kb on + strand at 5132.059 kb on - strand at 5132.059 kb on - strand at 5132.159 kb on - strand at 5132.159 kb on - strand at 5132.171 kb on - strand at 5132.187 kb on - strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.261 kb on + strand at 5132.262 kb on - strand at 5132.318 kb on - strand, within AO353_23430 at 5132.318 kb on - strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.636 kb on + strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430 at 5132.637 kb on - strand, within AO353_23430
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 5,130,468 - AO353_23415 0.81 -1.3 5,130,491 + AO353_23415 0.85 +1.2 5,130,524 - +0.3 5,130,578 + -0.2 5,130,578 + -0.2 5,130,578 + -0.5 5,130,578 + -0.4 5,130,579 - +0.4 5,130,868 + AO353_23420 0.33 -0.1 5,130,869 - AO353_23420 0.33 -0.6 5,130,869 - AO353_23420 0.33 -0.4 5,130,869 - AO353_23420 0.33 +1.3 5,130,869 - AO353_23420 0.33 +1.0 5,130,869 - AO353_23420 0.33 +1.4 5,130,869 - AO353_23420 0.33 -0.4 5,131,005 + AO353_23420 0.50 +0.4 5,131,005 + AO353_23420 0.50 -0.6 5,131,005 + AO353_23420 0.50 -0.4 5,131,005 + AO353_23420 0.50 -0.4 5,131,005 + AO353_23420 0.50 -0.1 5,131,005 + AO353_23420 0.50 +0.1 5,131,005 + AO353_23420 0.50 -0.8 5,131,005 + AO353_23420 0.50 -0.0 5,131,006 - AO353_23420 0.50 -0.9 5,131,006 - AO353_23420 0.50 -0.3 5,131,006 - AO353_23420 0.50 +0.6 5,131,006 - AO353_23420 0.50 -0.9 5,131,006 - AO353_23420 0.50 -1.8 5,131,006 - AO353_23420 0.50 -0.9 5,131,006 - AO353_23420 0.50 +0.7 5,131,006 - AO353_23420 0.50 -0.4 5,131,006 - AO353_23420 0.50 +0.6 5,131,006 - AO353_23420 0.50 +0.5 5,131,012 + AO353_23420 0.50 -0.5 5,131,012 + AO353_23420 0.50 -0.1 5,131,012 + AO353_23420 0.50 +0.4 5,131,013 - AO353_23420 0.51 +0.0 5,131,013 - AO353_23420 0.51 -2.1 5,131,013 - AO353_23420 0.51 -0.0 5,131,013 - AO353_23420 0.51 -0.6 5,131,013 - AO353_23420 0.51 -1.1 5,131,013 - AO353_23420 0.51 -0.4 5,131,031 + AO353_23420 0.53 -0.2 5,131,032 - AO353_23420 0.53 -0.8 5,131,130 + AO353_23420 0.65 +0.2 5,131,138 + AO353_23420 0.66 -0.6 5,131,138 + AO353_23420 0.66 +0.1 5,131,138 + AO353_23420 0.66 -0.8 5,131,139 - AO353_23420 0.66 -0.2 5,131,139 - AO353_23420 0.66 +0.8 5,131,255 + AO353_23420 0.80 +1.2 5,131,255 + AO353_23420 0.80 -0.1 5,131,255 + AO353_23420 0.80 -1.0 5,131,255 + AO353_23420 0.80 -0.0 5,131,256 - AO353_23420 0.80 -0.3 5,131,256 - AO353_23420 0.80 -0.1 5,131,256 - AO353_23420 0.80 -2.5 5,131,256 - AO353_23420 0.80 -0.2 5,131,256 - AO353_23420 0.80 -0.6 5,131,316 - AO353_23420 0.87 +1.7 5,131,460 + -0.6 5,131,460 + -0.3 5,131,460 + -0.2 5,131,460 + +0.1 5,131,460 + -0.8 5,131,460 + -1.5 5,131,460 + -0.2 5,131,460 + -0.9 5,131,460 + +1.4 5,131,461 - +0.2 5,131,461 - +1.0 5,131,461 - +0.9 5,131,461 - +2.1 5,131,461 - +1.1 5,131,463 + +0.2 5,131,463 + +0.4 5,131,463 + +0.3 5,131,463 + +0.2 5,131,463 + -0.6 5,131,464 - +1.4 5,131,464 - +0.4 5,131,464 - +0.6 5,131,464 - -2.2 5,131,464 - +0.1 5,131,464 - -0.4 5,131,735 - AO353_23425 0.54 +0.6 5,131,895 + AO353_23425 0.86 -0.8 5,131,895 + AO353_23425 0.86 -1.1 5,131,895 + AO353_23425 0.86 -0.0 5,131,896 - AO353_23425 0.86 -1.2 5,131,896 - AO353_23425 0.86 -0.3 5,131,896 - AO353_23425 0.86 -0.9 5,131,896 - AO353_23425 0.86 -0.8 5,131,896 - AO353_23425 0.86 -2.6 5,131,896 - AO353_23425 0.86 -0.9 5,131,999 + +0.2 5,131,999 + +2.4 5,131,999 + +1.0 5,131,999 + -0.4 5,131,999 + -0.6 5,131,999 + -0.1 5,131,999 + -1.2 5,131,999 + +1.4 5,132,000 - -0.3 5,132,000 - +1.1 5,132,000 - -1.0 5,132,003 - +0.5 5,132,007 + +1.0 5,132,007 + -0.2 5,132,007 + -1.6 5,132,008 - -0.2 5,132,008 - +0.4 5,132,008 - -0.2 5,132,008 - +0.7 5,132,032 - -1.2 5,132,058 + +0.5 5,132,058 + +0.3 5,132,058 + +1.1 5,132,059 - +1.2 5,132,059 - +0.1 5,132,159 - -0.4 5,132,159 - +0.1 5,132,171 - +0.2 5,132,187 - +0.7 5,132,261 + -1.9 5,132,261 + +0.4 5,132,261 + -0.2 5,132,261 + -0.3 5,132,262 - -1.6 5,132,318 - AO353_23430 0.15 +0.6 5,132,318 - AO353_23430 0.15 -1.4 5,132,636 + AO353_23430 0.84 +0.7 5,132,636 + AO353_23430 0.84 +1.8 5,132,636 + AO353_23430 0.84 -0.5 5,132,637 - AO353_23430 0.84 -0.5 5,132,637 - AO353_23430 0.84 -0.0 5,132,637 - AO353_23430 0.84 +0.3
Or see this region's nucleotide sequence