Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22415 and AO353_22420 overlap by 17 nucleotides AO353_22420 and AO353_22425 are separated by 473 nucleotides
AO353_22415: AO353_22415 - alcohol dehydrogenase, at 4,910,251 to 4,911,414
_22415
AO353_22420: AO353_22420 - histidine kinase, at 4,911,398 to 4,913,125
_22420
AO353_22425: AO353_22425 - peptidase, at 4,913,599 to 4,915,386
_22425
Position (kb) 4911
4912
4913
4914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4910.447 kb on - strand, within AO353_22415 at 4910.447 kb on - strand, within AO353_22415 at 4910.447 kb on - strand, within AO353_22415 at 4910.456 kb on - strand, within AO353_22415 at 4911.140 kb on - strand, within AO353_22415 at 4911.140 kb on - strand, within AO353_22415 at 4911.140 kb on - strand, within AO353_22415 at 4911.398 kb on - strand at 4911.398 kb on - strand at 4911.530 kb on + strand at 4912.055 kb on + strand, within AO353_22420 at 4912.055 kb on + strand, within AO353_22420 at 4912.055 kb on + strand, within AO353_22420 at 4912.056 kb on - strand, within AO353_22420 at 4912.056 kb on - strand, within AO353_22420 at 4912.257 kb on + strand, within AO353_22420 at 4912.257 kb on + strand, within AO353_22420 at 4912.257 kb on + strand, within AO353_22420 at 4912.257 kb on + strand, within AO353_22420 at 4912.258 kb on - strand, within AO353_22420 at 4912.258 kb on - strand, within AO353_22420 at 4912.403 kb on - strand, within AO353_22420 at 4912.427 kb on + strand, within AO353_22420 at 4913.174 kb on - strand at 4913.267 kb on + strand at 4913.267 kb on + strand at 4913.268 kb on - strand at 4913.268 kb on - strand at 4913.268 kb on - strand at 4913.422 kb on - strand at 4913.465 kb on + strand at 4913.465 kb on + strand at 4913.466 kb on - strand at 4913.466 kb on - strand at 4913.501 kb on + strand at 4913.502 kb on - strand at 4913.502 kb on - strand at 4913.502 kb on - strand at 4913.502 kb on - strand at 4913.502 kb on - strand at 4913.536 kb on + strand at 4913.537 kb on - strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.560 kb on + strand at 4913.561 kb on - strand at 4913.561 kb on - strand at 4913.561 kb on - strand at 4913.586 kb on - strand at 4913.586 kb on - strand at 4913.619 kb on + strand at 4913.619 kb on + strand at 4913.619 kb on + strand at 4913.620 kb on - strand at 4913.620 kb on - strand at 4913.646 kb on + strand at 4913.646 kb on + strand at 4913.647 kb on - strand at 4913.682 kb on - strand at 4913.697 kb on - strand at 4913.716 kb on + strand at 4913.716 kb on + strand at 4913.717 kb on - strand at 4913.718 kb on + strand at 4913.718 kb on + strand at 4913.718 kb on + strand at 4913.718 kb on + strand at 4913.731 kb on + strand at 4913.731 kb on + strand at 4913.731 kb on + strand at 4913.732 kb on - strand at 4913.856 kb on + strand, within AO353_22425 at 4913.856 kb on + strand, within AO353_22425 at 4913.890 kb on + strand, within AO353_22425 at 4913.890 kb on + strand, within AO353_22425 at 4913.890 kb on + strand, within AO353_22425 at 4913.890 kb on + strand, within AO353_22425 at 4913.890 kb on + strand, within AO353_22425 at 4913.891 kb on - strand, within AO353_22425 at 4913.891 kb on - strand, within AO353_22425 at 4913.892 kb on + strand, within AO353_22425 at 4913.893 kb on - strand, within AO353_22425 at 4914.027 kb on + strand at 4914.028 kb on - strand, within AO353_22425 at 4914.028 kb on - strand, within AO353_22425 at 4914.028 kb on - strand, within AO353_22425 at 4914.028 kb on - strand, within AO353_22425 at 4914.028 kb on - strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.031 kb on + strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.032 kb on - strand, within AO353_22425 at 4914.033 kb on + strand, within AO353_22425 at 4914.034 kb on - strand, within AO353_22425 at 4914.101 kb on + strand, within AO353_22425 at 4914.101 kb on + strand, within AO353_22425 at 4914.102 kb on - strand, within AO353_22425
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 4,910,447 - AO353_22415 0.17 -1.8 4,910,447 - AO353_22415 0.17 -0.6 4,910,447 - AO353_22415 0.17 -1.4 4,910,456 - AO353_22415 0.18 -1.1 4,911,140 - AO353_22415 0.76 -0.6 4,911,140 - AO353_22415 0.76 -3.1 4,911,140 - AO353_22415 0.76 -1.6 4,911,398 - -1.5 4,911,398 - -0.4 4,911,530 + -0.6 4,912,055 + AO353_22420 0.38 -2.4 4,912,055 + AO353_22420 0.38 -0.5 4,912,055 + AO353_22420 0.38 -0.5 4,912,056 - AO353_22420 0.38 -1.6 4,912,056 - AO353_22420 0.38 -2.0 4,912,257 + AO353_22420 0.50 -0.4 4,912,257 + AO353_22420 0.50 +0.0 4,912,257 + AO353_22420 0.50 -0.3 4,912,257 + AO353_22420 0.50 -0.9 4,912,258 - AO353_22420 0.50 -1.8 4,912,258 - AO353_22420 0.50 -0.5 4,912,403 - AO353_22420 0.58 +0.8 4,912,427 + AO353_22420 0.60 +0.4 4,913,174 - -1.3 4,913,267 + -2.3 4,913,267 + -0.4 4,913,268 - -0.7 4,913,268 - +0.3 4,913,268 - -0.6 4,913,422 - -0.7 4,913,465 + +0.1 4,913,465 + -1.1 4,913,466 - -0.2 4,913,466 - -0.1 4,913,501 + +0.3 4,913,502 - +0.5 4,913,502 - +0.2 4,913,502 - -0.4 4,913,502 - -0.8 4,913,502 - -0.5 4,913,536 + +0.0 4,913,537 - +1.1 4,913,560 + +0.0 4,913,560 + +0.2 4,913,560 + -0.5 4,913,560 + -1.0 4,913,560 + +0.9 4,913,560 + -1.2 4,913,560 + -0.7 4,913,560 + +0.7 4,913,560 + -0.3 4,913,560 + -0.4 4,913,560 + -0.8 4,913,561 - +1.5 4,913,561 - +0.4 4,913,561 - -0.8 4,913,586 - +0.8 4,913,586 - -0.3 4,913,619 + -0.8 4,913,619 + +1.0 4,913,619 + +0.2 4,913,620 - +0.7 4,913,620 - -0.3 4,913,646 + -2.1 4,913,646 + +0.1 4,913,647 - +0.9 4,913,682 - -1.2 4,913,697 - -1.2 4,913,716 + +1.3 4,913,716 + -0.2 4,913,717 - -1.5 4,913,718 + +0.5 4,913,718 + +0.4 4,913,718 + -0.7 4,913,718 + -1.6 4,913,731 + +0.4 4,913,731 + +0.0 4,913,731 + -2.3 4,913,732 - +1.2 4,913,856 + AO353_22425 0.14 -0.5 4,913,856 + AO353_22425 0.14 -1.5 4,913,890 + AO353_22425 0.16 -1.8 4,913,890 + AO353_22425 0.16 +0.3 4,913,890 + AO353_22425 0.16 +0.7 4,913,890 + AO353_22425 0.16 -0.0 4,913,890 + AO353_22425 0.16 +0.0 4,913,891 - AO353_22425 0.16 -0.3 4,913,891 - AO353_22425 0.16 +0.3 4,913,892 + AO353_22425 0.16 +1.2 4,913,893 - AO353_22425 0.16 +0.7 4,914,027 + +0.5 4,914,028 - AO353_22425 0.24 -1.3 4,914,028 - AO353_22425 0.24 -0.7 4,914,028 - AO353_22425 0.24 -1.1 4,914,028 - AO353_22425 0.24 -0.1 4,914,028 - AO353_22425 0.24 +1.2 4,914,031 + AO353_22425 0.24 +0.2 4,914,031 + AO353_22425 0.24 -0.1 4,914,031 + AO353_22425 0.24 +0.3 4,914,031 + AO353_22425 0.24 +0.9 4,914,031 + AO353_22425 0.24 -0.7 4,914,031 + AO353_22425 0.24 +2.1 4,914,031 + AO353_22425 0.24 +1.2 4,914,031 + -1.1 4,914,031 + AO353_22425 0.24 -2.9 4,914,031 + AO353_22425 0.24 +0.3 4,914,031 + AO353_22425 0.24 -0.5 4,914,031 + AO353_22425 0.24 +1.7 4,914,031 + +0.8 4,914,031 + AO353_22425 0.24 -1.1 4,914,031 + AO353_22425 0.24 +0.1 4,914,031 + AO353_22425 0.24 -0.1 4,914,031 + AO353_22425 0.24 -0.4 4,914,031 + AO353_22425 0.24 -0.2 4,914,031 + AO353_22425 0.24 +1.2 4,914,031 + AO353_22425 0.24 -3.4 4,914,032 - AO353_22425 0.24 +1.1 4,914,032 - AO353_22425 0.24 -0.2 4,914,032 - AO353_22425 0.24 +0.3 4,914,032 - AO353_22425 0.24 -1.8 4,914,032 - AO353_22425 0.24 +1.2 4,914,032 - AO353_22425 0.24 +1.1 4,914,032 - AO353_22425 0.24 -0.3 4,914,032 - AO353_22425 0.24 -0.4 4,914,032 - AO353_22425 0.24 -0.4 4,914,032 - AO353_22425 0.24 -1.0 4,914,032 - AO353_22425 0.24 -0.9 4,914,032 - AO353_22425 0.24 -0.4 4,914,032 - AO353_22425 0.24 -2.8 4,914,033 + AO353_22425 0.24 +3.1 4,914,034 - AO353_22425 0.24 -1.0 4,914,101 + AO353_22425 0.28 -0.5 4,914,101 + AO353_22425 0.28 +0.5 4,914,102 - AO353_22425 0.28 -0.5
Or see this region's nucleotide sequence