Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09010

Experiment: Cytidine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cytidine (C)
1,977,430	+				+0.5
1,977,466	+				-0.6
1,977,466	+				-0.6
1,977,466	+				-0.4
1,977,467	-				+0.8
1,977,467	-				+0.6
1,977,467	-				-0.2
1,977,475	+				+0.5
1,977,475	+				+0.1
1,977,475	+				-1.5
1,977,475	+				-0.1
1,977,475	+				-0.7
1,977,475	+				-0.9
1,977,475	+				+0.3
1,977,475	+				-0.2
1,977,475	+				+0.8
1,977,476	-				+0.4
1,977,476	-				+0.1
1,977,476	-				+0.8
1,977,476	-				-0.5
1,977,476	-				+0.6
1,977,476	-				-0.2
1,977,476	-				-1.2
1,977,476	-				+0.9
1,977,476	-				+1.8
1,977,476	-				+0.4
1,977,476	-				+0.6
1,977,476	-				+1.7
1,977,476	-				-0.4
1,977,476	-				-0.4
1,977,476	-				+0.1
1,977,476	-				-0.4
1,977,476	-				-0.9
1,977,476	-				-0.9
1,977,483	-				-0.2
1,977,512	+				+0.9
1,977,552	+				+1.1
1,977,553	-				+0.1
1,977,553	-				+1.2
1,977,553	-				+0.2
1,977,560	+				+0.1
1,977,560	+				+2.2
1,977,560	+				-1.1
1,977,561	-				-0.3
1,977,561	-				+1.1
1,977,561	-				+0.1
1,977,711	+		AO353_09005	0.23	+0.6
1,977,711	+		AO353_09005	0.23	-0.3
1,977,711	+		AO353_09005	0.23	-1.4
1,977,711	+		AO353_09005	0.23	-0.6
1,977,712	-		AO353_09005	0.23	+0.7
1,977,741	-		AO353_09005	0.28	+0.6
1,977,749	+		AO353_09005	0.29	+1.0
1,977,749	+		AO353_09005	0.29	-0.9
1,977,749	+		AO353_09005	0.29	-0.1
1,977,749	+		AO353_09005	0.29	-0.5
1,977,749	+		AO353_09005	0.29	+1.1
1,977,749	+		AO353_09005	0.29	+0.1
1,977,750	-		AO353_09005	0.29	+0.4
1,977,750	-		AO353_09005	0.29	+0.2
1,977,750	-		AO353_09005	0.29	-0.3
1,977,750	-		AO353_09005	0.29	+0.1
1,977,750	-		AO353_09005	0.29	+1.2
1,977,785	+		AO353_09005	0.34	+0.1
1,977,786	-		AO353_09005	0.34	-0.5
1,977,786	-		AO353_09005	0.34	+0.1
1,977,923	+		AO353_09005	0.55	-0.5
1,977,923	+		AO353_09005	0.55	-0.1
1,977,923	+		AO353_09005	0.55	+0.6
1,977,923	+		AO353_09005	0.55	-1.4
1,977,923	+		AO353_09005	0.55	+0.1
1,977,923	+		AO353_09005	0.55	+0.9
1,977,923	+		AO353_09005	0.55	+0.1
1,977,923	+		AO353_09005	0.55	+0.7
1,977,923	+		AO353_09005	0.55	+0.4
1,977,923	+		AO353_09005	0.55	+0.0
1,977,924	-		AO353_09005	0.55	+0.5
1,977,924	-		AO353_09005	0.55	-0.9
1,977,924	-		AO353_09005	0.55	-0.4
1,977,924	-		AO353_09005	0.55	+0.1
1,977,924	-		AO353_09005	0.55	-0.9
1,977,924	-		AO353_09005	0.55	+0.2
1,977,924	-		AO353_09005	0.55	-0.8
1,977,924	-		AO353_09005	0.55	+0.6
1,977,924	-		AO353_09005	0.55	+0.1
1,977,924	-		AO353_09005	0.55	-1.2
1,977,924	-		AO353_09005	0.55	-1.2
1,977,924	-		AO353_09005	0.55	-0.4
1,978,016	+		AO353_09005	0.69	+1.2
1,978,016	+		AO353_09005	0.69	-0.4
1,978,017	-		AO353_09005	0.69	-1.0
1,978,017	-		AO353_09005	0.69	+0.8
1,978,122	-		AO353_09005	0.85	+0.3
1,978,122	-		AO353_09005	0.85	-0.8
1,978,181	+				-0.5
1,978,181	+				-1.4
1,978,181	+				+0.5
1,978,181	+				-0.4
1,978,181	+				-0.9
1,978,181	+				+0.3
1,978,181	+				-0.6
1,978,181	+				+0.6
1,978,181	+				-0.2
1,978,181	+				+0.1
1,978,181	+				+0.9
1,978,181	+				+0.4
1,978,181	+				-0.9
1,978,181	+				-2.7
1,978,181	+				-0.1
1,978,181	+				+0.6
1,978,181	+				+1.2
1,978,182	-				-0.1
1,978,182	-				-0.9
1,978,182	-				-0.5
1,978,182	-				-0.2
1,978,182	-				+1.8
1,978,182	-				-0.3
1,978,182	-				-0.2
1,978,184	+				-1.6
1,978,184	+				+1.1
1,978,184	+				+1.9
1,978,184	+				+1.4
1,978,184	+				+0.1
1,978,184	+				-0.6
1,978,185	-				+0.8
1,978,185	-				+0.1
1,978,185	-				+0.3
1,978,185	-				+0.1
1,978,205	+				+1.0
1,978,223	+				+0.6
1,978,223	+				+0.2
1,978,223	+				-0.9
1,978,224	-				-1.7
1,978,224	-				+1.6
1,978,224	-				+0.4
1,978,224	-				-0.4
1,978,260	+				-2.0
1,978,260	+				-0.4
1,978,261	-				+0.6
1,978,261	-				-1.5
1,978,261	-				+0.4
1,978,261	-				-1.1
1,978,261	-				-0.6
1,978,261	-				-0.7
1,978,262	+				-0.9
1,978,262	+				+0.5
1,978,262	+				+0.1
1,978,262	+				-0.9
1,978,262	+				-0.6
1,978,262	+				-0.4
1,978,262	+				+0.2
1,978,262	+				+1.0
1,978,262	+				-0.1
1,978,262	+				-0.0
1,978,262	+				-0.6
1,978,262	+				+0.6
1,978,262	+				+0.9
1,978,262	+				+0.4
1,978,262	+				-0.2
1,978,262	+				+0.4
1,978,262	+				+0.5
1,978,262	+				+0.3
1,978,262	+				-0.7
1,978,262	+				-0.1
1,978,262	+				+0.9
1,978,262	+				-1.1
1,978,262	+				+0.2
1,978,262	+				-1.9
1,978,263	-				+2.2
1,978,263	-				+1.1
1,978,263	-				-1.4
1,978,263	-				-1.5
1,978,263	-				+0.7
1,978,263	-				+1.1
1,978,263	-				+0.4
1,978,263	-				+1.5
1,978,263	-				+1.2
1,978,263	-				+1.1
1,978,263	-				-1.5
1,978,263	-				+1.1
1,978,263	-				-0.5
1,978,263	-				-1.2
1,978,263	-				-1.2
1,978,263	-				-0.3
1,978,263	-				+0.0
1,978,263	-				-0.5
1,978,263	-				-0.9
1,978,263	-				-0.7
1,978,263	-				-0.5
1,978,263	-				-0.1
1,978,263	-				-1.0
1,978,263	-				+2.6
1,978,263	-				+0.5
1,978,312	+				+0.6
1,978,312	+				-0.7
1,978,312	+				-0.6
1,978,313	-				+0.2
1,978,313	-				+0.4
1,978,313	-				-1.0
1,978,355	+				-1.2
1,978,578	+		AO353_09010	0.82	-0.7
1,978,578	+		AO353_09010	0.82	-0.8
1,978,578	+		AO353_09010	0.82	+0.6
1,978,578	+		AO353_09010	0.82	-0.9
1,978,578	+		AO353_09010	0.82	-0.3
1,978,579	-		AO353_09010	0.82	-0.7
1,978,579	-		AO353_09010	0.82	-1.5
1,978,579	-		AO353_09010	0.82	-1.0
1,978,579	-		AO353_09010	0.82	-0.6
1,978,579	-		AO353_09010	0.82	-0.8
1,978,626	+				-0.6
1,978,626	+				+0.8
1,978,626	+				-0.2
1,978,626	+				+0.2
1,978,626	+				+0.1
1,978,626	+				-0.9
1,978,626	+				+0.5
1,978,626	+				-0.1
1,978,627	-				+0.1
1,978,627	-				-0.3
1,978,627	-				+0.9
1,978,627	-				-1.0
1,978,627	-				-0.6
1,978,627	-				+1.1
1,978,712	+				-0.0
1,978,726	+				-0.6
1,978,726	+				-0.0
1,978,726	+				-0.6
1,978,727	-				-0.2
1,978,727	-				+0.3
1,978,727	-				+0.1
1,978,727	-				-0.7
1,978,747	-				-2.0
1,978,747	-				+2.2
1,978,792	+				-1.2
1,978,836	+				+1.0
1,978,836	+				-0.2
1,978,836	+				+0.5
1,978,837	-				+2.2
1,978,837	-				-0.1
1,978,837	-				+0.8
1,978,837	-				+0.8
1,978,837	-				-0.4
1,978,875	+				-0.3
1,978,891	+				-0.6
1,978,892	-				+1.1
1,978,892	-				+0.6
1,978,897	+				+0.1
1,978,897	+				-0.7
1,978,897	+				-0.4
1,978,897	+				-0.1
1,978,897	+				-0.2
1,978,898	-				+0.2
1,978,898	-				+0.3
1,978,898	-				-0.2
1,978,915	+				-0.3
1,978,915	+				+2.0
1,978,915	+				-1.4
1,978,915	+				+1.0
1,978,915	+				-1.9
1,978,915	+				+0.5
1,978,915	+				+0.8
1,978,915	+				+0.9
1,978,915	+				+0.7
1,978,915	+				+0.4
1,978,915	+				+1.0
1,978,916	-				+1.2
1,978,916	-				+0.5
1,978,916	-				-0.2
1,978,916	-				-0.2
1,978,916	-				-1.0
1,978,916	-				-0.2
1,978,916	-				+0.2
1,978,916	-				+0.8
1,978,916	-				+0.6
1,978,916	-				+0.3
1,978,916	-				-0.9
1,978,916	-				-0.5
1,978,916	-				-0.2
1,978,925	-				-0.6
1,979,116	+		AO353_09015	0.81	+0.5
1,979,116	+		AO353_09015	0.81	+0.1
1,979,116	+		AO353_09015	0.81	+0.1
1,979,117	-		AO353_09015	0.82	-0.1
1,979,117	-		AO353_09015	0.82	+1.6
1,979,117	-		AO353_09015	0.82	+0.2
1,979,117	-		AO353_09015	0.82	-0.3
1,979,117	-		AO353_09015	0.82	+0.7
1,979,261	+				-0.4
1,979,261	+				-0.9
1,979,262	-				-0.4
1,979,262	-				-0.2
1,979,262	-				-1.1
1,979,284	+				+0.5
1,979,284	+				+0.0
1,979,284	+				-2.6
1,979,285	-				-0.4
1,979,285	-				+1.6
1,979,522	+				-0.3
1,979,522	+				-0.1
1,979,544	+				+0.6
1,979,544	+				+0.7
1,979,545	-				+0.1
1,979,545	-				-0.1
1,979,545	-				+0.3