Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03760 and AO353_03765 are separated by 253 nucleotides AO353_03765 and AO353_03770 are separated by 127 nucleotides AO353_03770 and AO353_03775 are separated by 245 nucleotides
AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338
_03760
AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966
_03765
AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393
_03770
AO353_03775: AO353_03775 - pyruvate kinase, at 805,639 to 807,090
_03775
Position (kb) 805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.354 kb on + strand at 804.354 kb on + strand at 804.354 kb on + strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.382 kb on - strand at 804.382 kb on - strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.394 kb on - strand at 804.394 kb on - strand at 804.478 kb on + strand at 804.488 kb on + strand at 804.489 kb on - strand at 804.489 kb on - strand at 804.502 kb on + strand at 804.503 kb on - strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.524 kb on - strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.687 kb on - strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 805.077 kb on - strand at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.276 kb on + strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.367 kb on - strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.466 kb on + strand at 805.467 kb on - strand at 805.467 kb on - strand at 805.473 kb on + strand at 805.506 kb on + strand at 805.507 kb on - strand at 805.547 kb on - strand at 805.566 kb on - strand at 805.566 kb on - strand at 805.585 kb on + strand at 805.585 kb on + strand at 805.586 kb on - strand at 805.586 kb on - strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.600 kb on + strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.601 kb on - strand at 805.603 kb on + strand at 805.603 kb on + strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.604 kb on - strand at 805.653 kb on + strand at 805.686 kb on + strand at 805.687 kb on - strand at 805.973 kb on - strand, within AO353_03775 at 806.206 kb on + strand, within AO353_03775 at 806.207 kb on - strand, within AO353_03775 at 806.248 kb on + strand, within AO353_03775 at 806.248 kb on + strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775 at 806.249 kb on - strand, within AO353_03775
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 804,218 + AO353_03760 0.66 -1.2 804,218 + AO353_03760 0.66 -0.1 804,218 + AO353_03760 0.66 -0.2 804,219 - AO353_03760 0.67 +0.2 804,219 - AO353_03760 0.67 -0.4 804,354 + +0.1 804,354 + -0.2 804,354 + +0.7 804,355 - -0.2 804,355 - -0.5 804,355 - +2.0 804,375 + -0.6 804,375 + -0.5 804,375 + +2.0 804,375 + -2.8 804,375 + +0.1 804,376 - -0.1 804,376 - -0.3 804,376 - +0.2 804,381 + +0.1 804,381 + -0.8 804,381 + +0.3 804,381 + -1.2 804,381 + +0.5 804,381 + +0.6 804,382 - +0.0 804,382 - -1.1 804,393 + +0.0 804,393 + -2.1 804,393 + -0.6 804,394 - -0.1 804,394 - +0.2 804,478 + +1.0 804,488 + -0.3 804,489 - -1.7 804,489 - +0.9 804,502 + -0.5 804,503 - -0.4 804,523 + +0.7 804,523 + +0.7 804,523 + -1.4 804,523 + +0.0 804,523 + -0.7 804,523 + -1.3 804,524 - -0.2 804,541 + -1.3 804,541 + +1.1 804,541 + +0.8 804,541 + +1.7 804,541 + -0.6 804,542 - -0.1 804,542 - +0.7 804,542 - -2.0 804,542 - -0.5 804,542 - +1.1 804,593 + +0.6 804,593 + -1.1 804,593 + -0.2 804,594 - -0.6 804,594 - -0.0 804,594 - -2.5 804,687 - AO353_03765 0.25 -0.2 804,722 + AO353_03765 0.35 -1.6 804,722 + AO353_03765 0.35 +0.7 804,722 + AO353_03765 0.35 +0.0 804,722 + AO353_03765 0.35 -1.0 804,722 + AO353_03765 0.35 -0.8 804,722 + AO353_03765 0.35 -1.0 804,723 - AO353_03765 0.35 -1.3 804,723 - AO353_03765 0.35 -0.4 804,743 + AO353_03765 0.40 -0.0 804,743 + AO353_03765 0.40 -0.0 804,743 + AO353_03765 0.40 -1.6 804,743 + AO353_03765 0.40 -0.1 804,743 + AO353_03765 0.40 -1.2 804,744 - AO353_03765 0.41 -0.4 804,744 - AO353_03765 0.41 +1.4 804,744 - AO353_03765 0.41 +1.2 804,744 - AO353_03765 0.41 +0.7 804,796 + AO353_03765 0.54 -0.5 804,796 + AO353_03765 0.54 -0.7 804,796 + AO353_03765 0.54 +0.2 804,796 + AO353_03765 0.54 -0.7 804,796 + AO353_03765 0.54 -0.8 804,796 + AO353_03765 0.54 -0.7 804,796 + +0.9 804,796 + AO353_03765 0.54 -0.2 804,796 + AO353_03765 0.54 -0.8 804,796 + AO353_03765 0.54 -0.0 804,796 + AO353_03765 0.54 -1.5 804,796 + AO353_03765 0.54 -0.7 804,796 + AO353_03765 0.54 +0.5 804,796 + AO353_03765 0.54 -2.6 804,796 + AO353_03765 0.54 -2.0 804,796 + AO353_03765 0.54 +0.6 804,797 - AO353_03765 0.55 -1.1 804,797 - AO353_03765 0.55 -1.4 804,797 - AO353_03765 0.55 -1.5 804,797 - AO353_03765 0.55 -1.2 804,797 - AO353_03765 0.55 -2.6 804,797 - AO353_03765 0.55 -0.3 804,797 - AO353_03765 0.55 -0.3 804,797 - AO353_03765 0.55 -0.7 804,797 - AO353_03765 0.55 -0.4 804,797 - AO353_03765 0.55 -1.1 804,797 - AO353_03765 0.55 -0.2 804,797 - AO353_03765 0.55 +1.2 804,797 - AO353_03765 0.55 +0.3 804,798 + AO353_03765 0.55 -1.4 804,798 + AO353_03765 0.55 -0.5 804,798 + AO353_03765 0.55 -1.6 804,798 + AO353_03765 0.55 -1.1 804,798 + AO353_03765 0.55 -0.7 804,798 + AO353_03765 0.55 +0.1 804,798 + AO353_03765 0.55 +0.3 804,799 - AO353_03765 0.55 -0.4 804,799 - AO353_03765 0.55 -1.0 804,799 - AO353_03765 0.55 -0.3 804,799 - AO353_03765 0.55 +1.6 804,799 - AO353_03765 0.55 +0.6 804,799 - AO353_03765 0.55 -1.0 804,800 + AO353_03765 0.55 -1.9 804,800 + AO353_03765 0.55 +0.8 804,801 - AO353_03765 0.56 +0.6 804,801 - AO353_03765 0.56 -1.1 804,801 - AO353_03765 0.56 -0.9 804,872 + AO353_03765 0.75 +0.0 804,872 + AO353_03765 0.75 +0.2 805,077 - +0.2 805,168 + AO353_03770 0.25 +0.2 805,168 + AO353_03770 0.25 +0.6 805,168 + AO353_03770 0.25 -0.3 805,169 - AO353_03770 0.25 +2.1 805,169 - AO353_03770 0.25 +1.6 805,169 - AO353_03770 0.25 +2.1 805,169 - AO353_03770 0.25 +1.0 805,276 + AO353_03770 0.61 -0.8 805,277 - AO353_03770 0.61 +1.6 805,277 - AO353_03770 0.61 +2.6 805,277 - AO353_03770 0.61 +2.3 805,277 - AO353_03770 0.61 +2.3 805,280 - AO353_03770 0.62 +2.9 805,280 - AO353_03770 0.62 +0.9 805,367 - +1.6 805,466 + -2.7 805,466 + -1.6 805,466 + -0.6 805,466 + -2.2 805,467 - +3.9 805,467 - +3.8 805,473 + -0.8 805,506 + -0.7 805,507 - +3.9 805,547 - +4.0 805,566 - +4.0 805,566 - +4.7 805,585 + -1.1 805,585 + -1.1 805,586 - +3.3 805,586 - +4.4 805,600 + -2.6 805,600 + -1.1 805,600 + -0.5 805,600 + +1.9 805,600 + -2.3 805,600 + -1.0 805,600 + -1.7 805,600 + -2.2 805,600 + -0.7 805,600 + -0.4 805,600 + -1.0 805,600 + -0.8 805,601 - +2.3 805,601 - +4.0 805,601 - +4.0 805,601 - +3.1 805,601 - +3.3 805,601 - +3.9 805,603 + -0.8 805,603 + -2.3 805,604 - +4.7 805,604 - +3.6 805,604 - +3.4 805,604 - +4.1 805,604 - +1.4 805,604 - +3.1 805,604 - +3.1 805,653 + +3.9 805,686 + +2.0 805,687 - +3.0 805,973 - AO353_03775 0.23 +4.2 806,206 + AO353_03775 0.39 +4.2 806,207 - AO353_03775 0.39 +2.8 806,248 + AO353_03775 0.42 +2.7 806,248 + AO353_03775 0.42 +3.5 806,249 - AO353_03775 0.42 +4.1 806,249 - AO353_03775 0.42 +3.5 806,249 - AO353_03775 0.42 +4.8 806,249 - AO353_03775 0.42 +3.9 806,249 - AO353_03775 0.42 +3.4 806,249 - AO353_03775 0.42 +3.6 806,249 - AO353_03775 0.42 +3.7
Or see this region's nucleotide sequence