Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02255 and AO353_02260 are separated by 101 nucleotides AO353_02260 and AO353_02265 are separated by 180 nucleotides
AO353_02255: AO353_02255 - alpha/beta hydrolase, at 482,204 to 483,172
_02255
AO353_02260: AO353_02260 - hypothetical protein, at 483,274 to 484,065
_02260
AO353_02265: AO353_02265 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 484,246 to 485,154
_02265
Position (kb) 483
484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.280 kb on + strand at 482.281 kb on - strand at 482.281 kb on - strand at 482.414 kb on - strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.561 kb on + strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.562 kb on - strand, within AO353_02255 at 482.612 kb on - strand, within AO353_02255 at 482.725 kb on - strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.876 kb on + strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 482.877 kb on - strand, within AO353_02255 at 483.092 kb on + strand at 483.092 kb on + strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.093 kb on - strand at 483.148 kb on + strand at 483.148 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.170 kb on + strand at 483.171 kb on - strand at 483.171 kb on - strand at 483.182 kb on - strand at 483.645 kb on + strand, within AO353_02260 at 483.645 kb on + strand, within AO353_02260 at 483.645 kb on + strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.646 kb on - strand, within AO353_02260 at 483.673 kb on + strand, within AO353_02260 at 483.673 kb on + strand, within AO353_02260 at 483.674 kb on - strand, within AO353_02260 at 483.674 kb on - strand, within AO353_02260 at 483.775 kb on + strand, within AO353_02260 at 483.776 kb on - strand, within AO353_02260 at 483.776 kb on - strand, within AO353_02260 at 483.815 kb on + strand, within AO353_02260 at 483.816 kb on - strand, within AO353_02260 at 483.816 kb on - strand, within AO353_02260 at 483.964 kb on + strand, within AO353_02260 at 483.964 kb on + strand, within AO353_02260 at 483.965 kb on - strand, within AO353_02260 at 483.965 kb on - strand, within AO353_02260 at 483.986 kb on + strand at 483.986 kb on + strand at 483.986 kb on + strand at 483.987 kb on - strand at 483.987 kb on - strand at 483.987 kb on - strand at 484.054 kb on - strand at 484.054 kb on - strand at 484.064 kb on - strand at 484.167 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.183 kb on + strand at 484.184 kb on - strand at 484.184 kb on - strand at 484.184 kb on - strand at 484.247 kb on + strand at 484.247 kb on + strand at 484.248 kb on - strand at 484.359 kb on - strand, within AO353_02265 at 484.509 kb on - strand, within AO353_02265 at 484.547 kb on + strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.548 kb on - strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.619 kb on + strand, within AO353_02265 at 484.721 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.846 kb on + strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.847 kb on - strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.901 kb on + strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.902 kb on - strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.988 kb on + strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265 at 484.989 kb on - strand, within AO353_02265
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 482,280 + +0.3 482,280 + -1.0 482,280 + -1.0 482,280 + -1.1 482,280 + -1.1 482,280 + -0.7 482,280 + -0.7 482,281 - -0.7 482,281 - -0.6 482,414 - AO353_02255 0.22 -0.6 482,561 + AO353_02255 0.37 -0.8 482,561 + AO353_02255 0.37 -0.2 482,561 + AO353_02255 0.37 -1.2 482,561 + AO353_02255 0.37 +0.3 482,561 + AO353_02255 0.37 +0.5 482,561 + AO353_02255 0.37 +0.4 482,562 - AO353_02255 0.37 +0.4 482,562 - AO353_02255 0.37 -0.9 482,562 - AO353_02255 0.37 +0.4 482,612 - AO353_02255 0.42 +0.8 482,725 - AO353_02255 0.54 +0.9 482,876 + AO353_02255 0.69 +0.1 482,876 + AO353_02255 0.69 -0.8 482,876 + AO353_02255 0.69 +0.4 482,876 + AO353_02255 0.69 +0.5 482,876 + AO353_02255 0.69 -1.2 482,876 + AO353_02255 0.69 -1.3 482,876 + AO353_02255 0.69 -0.8 482,876 + AO353_02255 0.69 -0.5 482,876 + AO353_02255 0.69 -0.5 482,876 + AO353_02255 0.69 +0.3 482,877 - AO353_02255 0.69 -0.7 482,877 - AO353_02255 0.69 +0.0 482,877 - AO353_02255 0.69 +0.8 482,877 - AO353_02255 0.69 +0.2 482,877 - AO353_02255 0.69 -0.3 483,092 + +0.9 483,092 + -0.3 483,093 - +0.6 483,093 - +0.7 483,093 - -0.3 483,093 - -0.4 483,148 + -0.1 483,148 + -1.0 483,170 + +1.1 483,170 + -0.2 483,170 + -1.3 483,170 + +0.7 483,170 + +0.4 483,171 - -0.2 483,171 - -0.7 483,182 - +0.1 483,645 + AO353_02260 0.47 +0.2 483,645 + AO353_02260 0.47 +0.4 483,645 + AO353_02260 0.47 +0.6 483,646 - AO353_02260 0.47 -1.1 483,646 - AO353_02260 0.47 -0.2 483,646 - AO353_02260 0.47 -0.5 483,673 + AO353_02260 0.50 -0.1 483,673 + AO353_02260 0.50 +0.4 483,674 - AO353_02260 0.51 -0.9 483,674 - AO353_02260 0.51 -0.2 483,775 + AO353_02260 0.63 -0.9 483,776 - AO353_02260 0.63 -0.9 483,776 - AO353_02260 0.63 -0.1 483,815 + AO353_02260 0.68 -0.5 483,816 - AO353_02260 0.68 -0.0 483,816 - AO353_02260 0.68 -0.1 483,964 + AO353_02260 0.87 -0.9 483,964 + AO353_02260 0.87 -1.1 483,965 - AO353_02260 0.87 +0.4 483,965 - AO353_02260 0.87 -1.0 483,986 + -2.2 483,986 + +1.6 483,986 + +0.7 483,987 - -0.2 483,987 - -0.6 483,987 - -0.6 484,054 - -1.1 484,054 - -0.5 484,064 - -1.3 484,167 + -0.5 484,183 + +0.1 484,183 + +0.6 484,183 + -0.3 484,183 + -0.4 484,184 - +0.2 484,184 - +0.5 484,184 - +0.3 484,247 + +0.6 484,247 + -1.2 484,248 - -0.0 484,359 - AO353_02265 0.12 -0.7 484,509 - AO353_02265 0.29 +0.6 484,547 + AO353_02265 0.33 +0.5 484,548 - AO353_02265 0.33 -0.8 484,548 - AO353_02265 0.33 +0.7 484,548 - AO353_02265 0.33 +0.9 484,548 - AO353_02265 0.33 -0.2 484,619 + AO353_02265 0.41 -0.1 484,619 + AO353_02265 0.41 +0.2 484,721 + AO353_02265 0.52 +0.8 484,846 + AO353_02265 0.66 +0.1 484,846 + AO353_02265 0.66 +0.3 484,846 + AO353_02265 0.66 -0.3 484,847 - AO353_02265 0.66 -2.1 484,847 - AO353_02265 0.66 -0.5 484,847 - AO353_02265 0.66 +1.8 484,901 + AO353_02265 0.72 +0.7 484,901 + AO353_02265 0.72 +0.2 484,901 + AO353_02265 0.72 -2.9 484,901 + AO353_02265 0.72 +0.0 484,902 - AO353_02265 0.72 -1.6 484,902 - AO353_02265 0.72 +1.1 484,988 + AO353_02265 0.82 -0.7 484,988 + AO353_02265 0.82 -0.0 484,988 + AO353_02265 0.82 -1.0 484,988 + AO353_02265 0.82 +2.3 484,988 + AO353_02265 0.82 -1.2 484,989 - AO353_02265 0.82 +0.2 484,989 - AO353_02265 0.82 -0.7 484,989 - AO353_02265 0.82 +0.8 484,989 - AO353_02265 0.82 -1.0 484,989 - AO353_02265 0.82 +0.1 484,989 - AO353_02265 0.82 -0.8 484,989 - AO353_02265 0.82 +0.6 484,989 - AO353_02265 0.82 -0.0 484,989 - AO353_02265 0.82 +1.0 484,989 - AO353_02265 0.82 +0.3 484,989 - AO353_02265 0.82 +0.6 484,989 - AO353_02265 0.82 -0.9 484,989 - AO353_02265 0.82 -0.8
Or see this region's nucleotide sequence