Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0860

Experiment: Gly-DL-Asp (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0859 and BT0860 are separated by 49 nucleotidesBT0860 and BT0861 are separated by 17 nucleotides BT0859: BT0859 - conserved hypothetical protein (NCBI ptt file), at 1,049,017 to 1,051,392 BT0859 BT0860: BT0860 - putative ABC transporter ATP-binding protein (NCBI ptt file), at 1,051,442 to 1,052,116 BT0860 BT0861: BT0861 - putative ABC transporter permease (NCBI ptt file), at 1,052,134 to 1,054,479 BT0861 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1at 1050.631 kb on - strand, within BT0859at 1050.678 kb on + strand, within BT0859at 1050.833 kb on - strand, within BT0859at 1051.414 kb on - strandat 1051.513 kb on - strand, within BT0860at 1051.832 kb on - strand, within BT0860at 1051.909 kb on - strand, within BT0860at 1051.922 kb on - strand, within BT0860at 1052.032 kb on - strand, within BT0860at 1052.069 kb on - strandat 1052.146 kb on + strandat 1052.147 kb on - strandat 1052.278 kb on - strandat 1052.341 kb on - strandat 1052.475 kb on - strand, within BT0861at 1052.698 kb on - strand, within BT0861at 1052.712 kb on - strand, within BT0861at 1052.712 kb on - strand, within BT0861at 1052.746 kb on - strand, within BT0861at 1052.797 kb on - strand, within BT0861at 1052.926 kb on - strand, within BT0861at 1052.926 kb on - strand, within BT0861at 1052.941 kb on - strand, within BT0861at 1053.008 kb on - strand, within BT0861

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-DL-Asp (N)
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1,050,631 - BT0859 0.68 -0.4
1,050,678 + BT0859 0.70 -1.1
1,050,833 - BT0859 0.76 -0.8
1,051,414 - -0.5
1,051,513 - BT0860 0.11 -0.5
1,051,832 - BT0860 0.58 -1.1
1,051,909 - BT0860 0.69 -1.7
1,051,922 - BT0860 0.71 -0.5
1,052,032 - BT0860 0.87 -2.2
1,052,069 - -0.8
1,052,146 + -1.3
1,052,147 - -0.8
1,052,278 - -0.1
1,052,341 - +0.5
1,052,475 - BT0861 0.15 +0.5
1,052,698 - BT0861 0.24 -0.5
1,052,712 - BT0861 0.25 -0.2
1,052,712 - BT0861 0.25 -0.1
1,052,746 - BT0861 0.26 +1.5
1,052,797 - BT0861 0.28 -1.1
1,052,926 - BT0861 0.34 +0.1
1,052,926 - BT0861 0.34 -1.2
1,052,941 - BT0861 0.34 -1.7
1,053,008 - BT0861 0.37 -0.1

Or see this region's nucleotide sequence