Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
Pf1N1B4_5403 - hypothetical protein, at 137,090 to 137,365
_5403
Position (kb) 137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.138 kb on + strand at 136.139 kb on - strand at 136.261 kb on - strand at 136.261 kb on - strand at 136.307 kb on + strand at 136.307 kb on + strand at 136.308 kb on - strand at 136.308 kb on - strand at 136.308 kb on - strand at 136.308 kb on - strand at 136.309 kb on + strand at 136.353 kb on + strand at 136.448 kb on + strand at 136.449 kb on - strand at 136.449 kb on - strand at 136.449 kb on - strand at 136.449 kb on - strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.555 kb on + strand at 136.556 kb on - strand at 136.556 kb on - strand at 136.556 kb on - strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.559 kb on + strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.560 kb on - strand at 136.768 kb on + strand at 136.768 kb on + strand at 136.768 kb on + strand at 136.768 kb on + strand at 136.768 kb on + strand at 136.769 kb on - strand at 136.769 kb on - strand at 136.861 kb on + strand at 136.861 kb on + strand at 136.862 kb on - strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.888 kb on + strand at 136.889 kb on - strand at 136.889 kb on - strand at 136.889 kb on - strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.892 kb on + strand at 136.893 kb on - strand at 136.893 kb on - strand at 136.893 kb on - strand at 136.895 kb on + strand at 136.908 kb on + strand at 136.973 kb on + strand at 136.973 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.022 kb on + strand at 137.026 kb on - strand at 137.032 kb on + strand at 137.036 kb on + strand at 137.036 kb on + strand at 137.036 kb on + strand at 137.036 kb on + strand at 137.036 kb on + strand at 137.036 kb on + strand at 137.037 kb on - strand at 137.037 kb on - strand at 137.037 kb on - strand at 137.037 kb on - strand at 137.038 kb on + strand at 137.038 kb on + strand at 137.141 kb on + strand, within Pf1N1B4_5403 at 137.141 kb on + strand, within Pf1N1B4_5403 at 137.147 kb on + strand, within Pf1N1B4_5403 at 137.147 kb on + strand, within Pf1N1B4_5403 at 137.148 kb on - strand, within Pf1N1B4_5403 at 137.148 kb on - strand, within Pf1N1B4_5403 at 137.181 kb on + strand at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.183 kb on + strand, within Pf1N1B4_5403 at 137.184 kb on - strand, within Pf1N1B4_5403 at 137.184 kb on - strand, within Pf1N1B4_5403 at 137.187 kb on + strand, within Pf1N1B4_5403 at 137.187 kb on + strand, within Pf1N1B4_5403 at 137.187 kb on + strand, within Pf1N1B4_5403 at 137.187 kb on + strand, within Pf1N1B4_5403 at 137.188 kb on - strand, within Pf1N1B4_5403 at 137.188 kb on - strand, within Pf1N1B4_5403 at 137.360 kb on - strand at 137.393 kb on + strand at 137.394 kb on - strand at 137.438 kb on - strand at 137.438 kb on - strand at 137.487 kb on - strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.665 kb on - strand at 137.665 kb on - strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.733 kb on - strand at 137.854 kb on - strand at 137.889 kb on - strand at 137.897 kb on + strand at 137.938 kb on - strand at 137.987 kb on + strand at 138.005 kb on + strand at 138.005 kb on + strand at 138.005 kb on + strand at 138.005 kb on + strand at 138.006 kb on - strand at 138.006 kb on - strand at 138.006 kb on - strand at 138.006 kb on - strand at 138.006 kb on - strand at 138.006 kb on - strand at 138.019 kb on - strand at 138.089 kb on + strand at 138.090 kb on - strand at 138.090 kb on - strand at 138.205 kb on + strand at 138.206 kb on - strand at 138.206 kb on - strand at 138.206 kb on - strand at 138.209 kb on + strand at 138.209 kb on + strand at 138.210 kb on - strand at 138.210 kb on - strand at 138.210 kb on - strand at 138.210 kb on - strand at 138.210 kb on - strand at 138.215 kb on - strand at 138.215 kb on - strand at 138.226 kb on + strand at 138.226 kb on + strand at 138.226 kb on + strand at 138.270 kb on + strand at 138.271 kb on - strand at 138.271 kb on - strand at 138.271 kb on - strand at 138.271 kb on - strand at 138.271 kb on - strand at 138.278 kb on + strand at 138.279 kb on - strand at 138.279 kb on - strand at 138.279 kb on - strand at 138.279 kb on - strand at 138.279 kb on - strand at 138.301 kb on - strand at 138.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 136,138 + +0.6 136,139 - -1.1 136,261 - -0.2 136,261 - -0.3 136,307 + -0.5 136,307 + +1.0 136,308 - -0.5 136,308 - -0.9 136,308 - +0.0 136,308 - +0.9 136,309 + -0.1 136,353 + -0.4 136,448 + -0.5 136,449 - -0.3 136,449 - +0.1 136,449 - +0.6 136,449 - -0.2 136,555 + -0.3 136,555 + -2.6 136,555 + +0.0 136,555 + +0.2 136,555 + +0.5 136,555 + +1.9 136,555 + -1.0 136,556 - -0.9 136,556 - -0.2 136,556 - +0.6 136,559 + +1.9 136,559 + +0.3 136,559 + +0.4 136,559 + +1.0 136,559 + -1.1 136,559 + -0.6 136,559 + -0.1 136,559 + -0.6 136,559 + -0.4 136,559 + +2.7 136,560 - -0.5 136,560 - -0.6 136,560 - +0.9 136,560 - +0.2 136,560 - -0.8 136,560 - -1.4 136,560 - -0.6 136,560 - +0.7 136,768 + -0.0 136,768 + +1.4 136,768 + -0.1 136,768 + +1.7 136,768 + +0.6 136,769 - +0.7 136,769 - -0.2 136,861 + +0.1 136,861 + -0.5 136,862 - -0.3 136,888 + -0.6 136,888 + -0.0 136,888 + -0.3 136,888 + -0.5 136,888 + +0.4 136,888 + -0.9 136,888 + +0.1 136,888 + -0.2 136,888 + -1.0 136,888 + -0.2 136,889 - +0.1 136,889 - -0.4 136,889 - +1.0 136,892 + +0.2 136,892 + -1.4 136,892 + +0.8 136,892 + -0.1 136,892 + +1.1 136,892 + +0.3 136,892 + -0.4 136,892 + -0.1 136,893 - -1.2 136,893 - -2.0 136,893 - -0.2 136,895 + +0.1 136,908 + -0.2 136,973 + -0.2 136,973 + +0.3 137,022 + -0.5 137,022 + +0.3 137,022 + -0.4 137,022 + +0.6 137,022 + +1.8 137,022 + +0.4 137,022 + +0.8 137,026 - -0.2 137,032 + -0.6 137,036 + -1.3 137,036 + -0.9 137,036 + -0.1 137,036 + +0.5 137,036 + -0.2 137,036 + -0.2 137,037 - -0.0 137,037 - +0.3 137,037 - -1.1 137,037 - -0.3 137,038 + +0.0 137,038 + -0.4 137,141 + Pf1N1B4_5403 0.18 -0.2 137,141 + Pf1N1B4_5403 0.18 -1.2 137,147 + Pf1N1B4_5403 0.21 -1.1 137,147 + Pf1N1B4_5403 0.21 -0.2 137,148 - Pf1N1B4_5403 0.21 -0.9 137,148 - Pf1N1B4_5403 0.21 -1.8 137,181 + +0.5 137,183 + Pf1N1B4_5403 0.34 -1.6 137,183 + Pf1N1B4_5403 0.34 +2.0 137,183 + Pf1N1B4_5403 0.34 -0.1 137,183 + Pf1N1B4_5403 0.34 -2.8 137,183 + Pf1N1B4_5403 0.34 +0.3 137,183 + Pf1N1B4_5403 0.34 +0.4 137,183 + Pf1N1B4_5403 0.34 -0.1 137,184 - Pf1N1B4_5403 0.34 -2.3 137,184 - Pf1N1B4_5403 0.34 +0.0 137,187 + Pf1N1B4_5403 0.35 -1.5 137,187 + Pf1N1B4_5403 0.35 -0.8 137,187 + Pf1N1B4_5403 0.35 -0.5 137,187 + Pf1N1B4_5403 0.35 -0.7 137,188 - Pf1N1B4_5403 0.36 +0.6 137,188 - Pf1N1B4_5403 0.36 -1.6 137,360 - +1.7 137,393 + -0.6 137,394 - +1.7 137,438 - -1.4 137,438 - -0.5 137,487 - +0.1 137,523 + -0.2 137,523 + +0.3 137,524 - -0.2 137,524 - +0.5 137,524 - -0.3 137,524 - +0.1 137,524 - +0.9 137,524 - +1.1 137,524 - -0.4 137,524 - -0.7 137,665 - -0.1 137,665 - -0.6 137,732 + +1.1 137,732 + -0.7 137,732 + -0.4 137,732 + +0.2 137,732 + -0.4 137,732 + +0.5 137,732 + +0.9 137,732 + -0.2 137,733 - -0.2 137,733 - -1.1 137,733 - +0.6 137,733 - +0.6 137,733 - +0.1 137,733 - -1.4 137,733 - +1.3 137,854 - +0.8 137,889 - +0.5 137,897 + -2.4 137,938 - -0.6 137,987 + -0.8 138,005 + -0.9 138,005 + -1.7 138,005 + +1.7 138,005 + +0.5 138,006 - -0.7 138,006 - +0.3 138,006 - +0.3 138,006 - -0.3 138,006 - +1.5 138,006 - +1.7 138,019 - -0.6 138,089 + +0.1 138,090 - +0.3 138,090 - +0.0 138,205 + -0.7 138,206 - +0.3 138,206 - -0.4 138,206 - +0.7 138,209 + -0.4 138,209 + +0.0 138,210 - -0.4 138,210 - -0.4 138,210 - +0.1 138,210 - +0.5 138,210 - -0.3 138,215 - -1.1 138,215 - -0.4 138,226 + -0.1 138,226 + -0.3 138,226 + -0.7 138,270 + -0.7 138,271 - -1.2 138,271 - -0.7 138,271 - -1.1 138,271 - -1.3 138,271 - +0.6 138,278 + +0.4 138,279 - -2.1 138,279 - +0.5 138,279 - +0.7 138,279 - +0.2 138,279 - -0.0 138,301 - -0.6 138,301 - -0.4
Or see this region's nucleotide sequence