Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_143

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_143 and Pf1N1B4_144 are separated by 672 nucleotides Pf1N1B4_143 - hypothetical protein, at 164,310 to 164,669 _143 Pf1N1B4_144 - hypothetical protein, at 165,342 to 165,701 _144 Position (kb) 164 165Strain fitness (log2 ratio) -2 -1 0 1at 163.366 kb on + strandat 163.366 kb on + strandat 163.414 kb on + strandat 163.414 kb on + strandat 163.414 kb on + strandat 163.415 kb on - strandat 163.415 kb on - strandat 163.496 kb on + strandat 163.503 kb on + strandat 163.503 kb on + strandat 163.504 kb on - strandat 163.504 kb on - strandat 163.591 kb on + strandat 163.652 kb on + strandat 163.653 kb on - strandat 163.745 kb on + strandat 163.788 kb on + strandat 163.868 kb on + strandat 163.948 kb on + strandat 163.994 kb on - strandat 164.101 kb on + strandat 164.113 kb on - strandat 164.116 kb on + strandat 164.116 kb on + strandat 164.118 kb on - strandat 164.179 kb on - strandat 164.306 kb on + strandat 164.891 kb on + strandat 164.891 kb on + strandat 164.891 kb on + strandat 165.291 kb on - strandat 165.306 kb on + strandat 165.307 kb on - strandat 165.307 kb on - strandat 165.307 kb on - strandat 165.307 kb on - strandat 165.307 kb on - strandat 165.307 kb on - strandat 165.324 kb on + strandat 165.341 kb on + strandat 165.342 kb on - strandat 165.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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163,366 + +0.5
163,366 + +0.5
163,414 + -0.4
163,414 + -1.6
163,414 + +0.1
163,415 - +0.2
163,415 - -0.4
163,496 + +0.2
163,503 + -0.7
163,503 + +0.5
163,504 - -0.8
163,504 - +1.1
163,591 + -0.1
163,652 + +0.3
163,653 - -0.3
163,745 + -2.1
163,788 + +0.9
163,868 + -0.8
163,948 + +0.6
163,994 - -0.4
164,101 + +0.5
164,113 - +0.4
164,116 + +1.2
164,116 + +0.4
164,118 - +1.2
164,179 - +0.2
164,306 + -0.3
164,891 + +0.5
164,891 + +0.6
164,891 + +1.5
165,291 - +0.5
165,306 + -1.0
165,307 - -0.1
165,307 - -0.1
165,307 - +0.1
165,307 - +0.4
165,307 - +0.5
165,307 - +0.3
165,324 + -0.2
165,341 + -0.4
165,342 - +0.4
165,359 + +0.8

Or see this region's nucleotide sequence