Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03555

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03545 and MMP_RS03550 are separated by 95 nucleotidesMMP_RS03550 and MMP_RS03555 are separated by 122 nucleotidesMMP_RS03555 and MMP_RS03560 are separated by 102 nucleotides MMP_RS03545: MMP_RS03545 - ATP-binding protein, at 663,550 to 664,947 _RS03545 MMP_RS03550: MMP_RS03550 - DUF2124 domain-containing protein, at 665,043 to 665,519 _RS03550 MMP_RS03555: MMP_RS03555 - transcriptional regulator, at 665,642 to 666,622 _RS03555 MMP_RS03560: MMP_RS03560 - Na+/H+ antiporter NhaC family protein, at 666,725 to 668,302 _RS03560 Position (kb) 665 666 667Strain fitness (log2 ratio) -1 0 1at 664.683 kb on + strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.726 kb on - strand, within MMP_RS03545at 664.728 kb on - strand, within MMP_RS03545at 664.751 kb on - strand, within MMP_RS03545at 664.752 kb on + strand, within MMP_RS03545at 664.809 kb on - strandat 664.855 kb on - strandat 664.859 kb on + strandat 664.942 kb on - strandat 664.953 kb on - strandat 664.982 kb on + strandat 664.984 kb on - strandat 665.278 kb on + strand, within MMP_RS03550at 665.353 kb on - strand, within MMP_RS03550at 665.478 kb on - strandat 665.546 kb on + strandat 665.552 kb on - strandat 665.552 kb on - strandat 665.553 kb on + strandat 665.553 kb on + strandat 665.553 kb on + strandat 665.556 kb on + strandat 665.556 kb on + strandat 665.578 kb on + strandat 665.754 kb on - strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.785 kb on + strand, within MMP_RS03555at 665.788 kb on - strand, within MMP_RS03555at 666.107 kb on - strand, within MMP_RS03555at 666.165 kb on - strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.166 kb on + strand, within MMP_RS03555at 666.397 kb on - strand, within MMP_RS03555at 666.404 kb on + strand, within MMP_RS03555at 666.621 kb on + strandat 666.727 kb on + strandat 666.756 kb on - strandat 666.935 kb on + strand, within MMP_RS03560at 666.935 kb on + strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.969 kb on - strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.970 kb on + strand, within MMP_RS03560at 666.971 kb on - strand, within MMP_RS03560at 666.972 kb on + strand, within MMP_RS03560at 667.084 kb on - strand, within MMP_RS03560at 667.085 kb on + strand, within MMP_RS03560at 667.085 kb on + strand, within MMP_RS03560at 667.112 kb on - strand, within MMP_RS03560at 667.115 kb on - strand, within MMP_RS03560at 667.124 kb on - strand, within MMP_RS03560at 667.176 kb on - strand, within MMP_RS03560at 667.226 kb on - strand, within MMP_RS03560at 667.227 kb on + strand, within MMP_RS03560at 667.228 kb on - strand, within MMP_RS03560at 667.229 kb on + strand, within MMP_RS03560at 667.237 kb on - strand, within MMP_RS03560at 667.315 kb on - strand, within MMP_RS03560at 667.321 kb on + strand, within MMP_RS03560at 667.331 kb on + strand, within MMP_RS03560at 667.337 kb on - strand, within MMP_RS03560at 667.346 kb on - strand, within MMP_RS03560at 667.466 kb on - strand, within MMP_RS03560

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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664,683 + MMP_RS03545 0.81 -0.5
664,726 - MMP_RS03545 0.84 +0.2
664,726 - MMP_RS03545 0.84 +0.1
664,726 - MMP_RS03545 0.84 +0.4
664,728 - MMP_RS03545 0.84 -0.4
664,751 - MMP_RS03545 0.86 -0.1
664,752 + MMP_RS03545 0.86 +0.4
664,809 - -0.1
664,855 - +0.2
664,859 + +0.0
664,942 - +0.1
664,953 - +1.1
664,982 + -0.2
664,984 - +0.3
665,278 + MMP_RS03550 0.49 +0.1
665,353 - MMP_RS03550 0.65 -0.0
665,478 - +0.1
665,546 + +0.1
665,552 - +0.3
665,552 - +0.3
665,553 + +0.2
665,553 + -0.0
665,553 + -0.3
665,556 + +0.2
665,556 + +0.3
665,578 + -1.0
665,754 - MMP_RS03555 0.11 -0.3
665,785 + MMP_RS03555 0.15 -0.7
665,785 + MMP_RS03555 0.15 -0.3
665,788 - MMP_RS03555 0.15 -0.5
666,107 - MMP_RS03555 0.47 -0.7
666,165 - MMP_RS03555 0.53 -0.8
666,166 + MMP_RS03555 0.53 -0.7
666,166 + MMP_RS03555 0.53 -0.6
666,166 + MMP_RS03555 0.53 -0.8
666,166 + MMP_RS03555 0.53 -1.1
666,397 - MMP_RS03555 0.77 -0.5
666,404 + MMP_RS03555 0.78 -0.1
666,621 + +0.1
666,727 + -0.5
666,756 - -0.3
666,935 + MMP_RS03560 0.13 -0.4
666,935 + MMP_RS03560 0.13 -0.0
666,969 - MMP_RS03560 0.15 +0.5
666,969 - MMP_RS03560 0.15 -0.3
666,969 - MMP_RS03560 0.15 +0.2
666,970 + MMP_RS03560 0.16 +0.1
666,970 + MMP_RS03560 0.16 +0.1
666,970 + MMP_RS03560 0.16 +0.4
666,971 - MMP_RS03560 0.16 -0.4
666,972 + MMP_RS03560 0.16 -0.3
667,084 - MMP_RS03560 0.23 -0.9
667,085 + MMP_RS03560 0.23 -0.4
667,085 + MMP_RS03560 0.23 -0.3
667,112 - MMP_RS03560 0.25 -0.6
667,115 - MMP_RS03560 0.25 +0.4
667,124 - MMP_RS03560 0.25 -0.3
667,176 - MMP_RS03560 0.29 -0.5
667,226 - MMP_RS03560 0.32 +0.5
667,227 + MMP_RS03560 0.32 -0.5
667,228 - MMP_RS03560 0.32 -0.6
667,229 + MMP_RS03560 0.32 -0.2
667,237 - MMP_RS03560 0.32 -0.2
667,315 - MMP_RS03560 0.37 -0.3
667,321 + MMP_RS03560 0.38 -0.2
667,331 + MMP_RS03560 0.38 +0.2
667,337 - MMP_RS03560 0.39 -0.4
667,346 - MMP_RS03560 0.39 -0.4
667,466 - MMP_RS03560 0.47 -0.5

Or see this region's nucleotide sequence