Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03335

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03325 and MMP_RS03330 are separated by 131 nucleotidesMMP_RS03330 and MMP_RS03335 are separated by 153 nucleotidesMMP_RS03335 and MMP_RS03340 are separated by 2 nucleotidesMMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601 _RS03325 MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323 _RS03330 MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670 _RS03335 MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398 _RS03340 MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844 _RS03345 Position (kb) 626 627 628Strain fitness (log2 ratio) -2 -1 0 1at 625.496 kb on + strandat 625.574 kb on - strandat 625.645 kb on - strandat 625.668 kb on - strandat 625.669 kb on + strandat 625.669 kb on + strandat 625.689 kb on - strandat 625.697 kb on + strandat 625.795 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.801 kb on - strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.802 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.808 kb on + strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.812 kb on - strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.813 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.815 kb on + strand, within MMP_RS03330at 625.860 kb on - strand, within MMP_RS03330at 625.909 kb on - strand, within MMP_RS03330at 625.915 kb on + strand, within MMP_RS03330at 625.986 kb on + strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.993 kb on - strand, within MMP_RS03330at 625.994 kb on + strand, within MMP_RS03330at 626.088 kb on - strand, within MMP_RS03330at 626.110 kb on + strand, within MMP_RS03330at 626.208 kb on - strand, within MMP_RS03330at 626.209 kb on + strand, within MMP_RS03330at 626.242 kb on + strand, within MMP_RS03330at 626.294 kb on - strandat 626.319 kb on + strandat 626.375 kb on + strandat 626.396 kb on + strandat 626.551 kb on + strandat 626.563 kb on - strandat 626.581 kb on + strandat 626.763 kb on - strand, within MMP_RS03335at 626.764 kb on + strand, within MMP_RS03335at 626.796 kb on + strand, within MMP_RS03335at 627.036 kb on - strand, within MMP_RS03335at 627.037 kb on + strand, within MMP_RS03335at 627.055 kb on - strand, within MMP_RS03335at 627.136 kb on + strand, within MMP_RS03335at 627.253 kb on - strand, within MMP_RS03335at 627.354 kb on - strand, within MMP_RS03335at 627.475 kb on + strand, within MMP_RS03335at 627.653 kb on + strandat 627.726 kb on - strandat 627.971 kb on - strand, within MMP_RS03340at 628.394 kb on - strandat 628.441 kb on + strandat 628.506 kb on - strandat 628.544 kb on - strandat 628.551 kb on - strandat 628.559 kb on - strandat 628.559 kb on - strandat 628.561 kb on - strandat 628.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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625,496 + -0.1
625,574 - +0.1
625,645 - +0.1
625,668 - -0.3
625,669 + -0.2
625,669 + +0.3
625,689 - +0.5
625,697 + +0.2
625,795 - MMP_RS03330 0.10 -0.0
625,801 - MMP_RS03330 0.12 -0.1
625,801 - MMP_RS03330 0.12 -0.2
625,802 + MMP_RS03330 0.12 -0.3
625,802 + MMP_RS03330 0.12 +0.0
625,808 + MMP_RS03330 0.13 +0.1
625,808 + MMP_RS03330 0.13 +0.3
625,808 + MMP_RS03330 0.13 +1.4
625,812 - MMP_RS03330 0.13 -0.2
625,812 - MMP_RS03330 0.13 +0.0
625,812 - MMP_RS03330 0.13 +0.1
625,812 - MMP_RS03330 0.13 -0.0
625,812 - MMP_RS03330 0.13 -0.3
625,812 - MMP_RS03330 0.13 +0.4
625,813 + MMP_RS03330 0.14 -0.0
625,813 + MMP_RS03330 0.14 -0.2
625,813 + MMP_RS03330 0.14 -0.2
625,813 + MMP_RS03330 0.14 -0.2
625,815 + MMP_RS03330 0.14 -0.3
625,815 + MMP_RS03330 0.14 -0.0
625,860 - MMP_RS03330 0.21 +0.1
625,909 - MMP_RS03330 0.30 +0.0
625,915 + MMP_RS03330 0.31 -0.4
625,986 + MMP_RS03330 0.43 +0.3
625,993 - MMP_RS03330 0.44 -0.1
625,993 - MMP_RS03330 0.44 +0.2
625,994 + MMP_RS03330 0.44 -1.0
626,088 - MMP_RS03330 0.60 +0.7
626,110 + MMP_RS03330 0.64 -0.1
626,208 - MMP_RS03330 0.80 -0.4
626,209 + MMP_RS03330 0.81 +0.2
626,242 + MMP_RS03330 0.86 +0.5
626,294 - +0.1
626,319 + -2.0
626,375 + +0.3
626,396 + -0.2
626,551 + +0.3
626,563 - +0.3
626,581 + -0.5
626,763 - MMP_RS03335 0.24 -0.1
626,764 + MMP_RS03335 0.24 +0.2
626,796 + MMP_RS03335 0.27 -0.6
627,036 - MMP_RS03335 0.47 -0.7
627,037 + MMP_RS03335 0.47 -0.2
627,055 - MMP_RS03335 0.48 -0.2
627,136 + MMP_RS03335 0.55 +0.2
627,253 - MMP_RS03335 0.65 +0.2
627,354 - MMP_RS03335 0.73 -0.0
627,475 + MMP_RS03335 0.84 +0.8
627,653 + -0.4
627,726 - +0.5
627,971 - MMP_RS03340 0.41 +0.1
628,394 - +0.7
628,441 + -0.1
628,506 - -0.5
628,544 - -0.1
628,551 - +0.0
628,559 - +0.0
628,559 - +0.2
628,561 - +0.2
628,579 - -0.0

Or see this region's nucleotide sequence