Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02965 and MMP_RS02970 are separated by 334 nucleotides MMP_RS02970 and MMP_RS02975 are separated by 150 nucleotides MMP_RS02975 and MMP_RS02980 are separated by 63 nucleotides MMP_RS02980 and MMP_RS02985 are separated by 19 nucleotides
MMP_RS02965: MMP_RS02965 - carboxymuconolactone decarboxylase family protein, at 562,048 to 562,482
_RS02965
MMP_RS02970: MMP_RS02970 - hypothetical protein, at 562,817 to 563,107
_RS02970
MMP_RS02975: MMP_RS02975 - DUF2124 domain-containing protein, at 563,258 to 563,740
_RS02975
MMP_RS02980: MMP_RS02980 - ATP-grasp domain-containing protein, at 563,804 to 564,712
_RS02980
MMP_RS02985: MMP_RS02985 - hypothetical protein, at 564,732 to 565,655
_RS02985
Position (kb) 563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 562.483 kb on + strand at 562.509 kb on - strand at 562.515 kb on + strand at 562.559 kb on - strand at 562.567 kb on + strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.568 kb on - strand at 562.576 kb on - strand at 562.577 kb on + strand at 562.584 kb on + strand at 562.622 kb on + strand at 562.634 kb on + strand at 562.683 kb on - strand at 562.860 kb on - strand, within MMP_RS02970 at 562.860 kb on - strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.918 kb on + strand, within MMP_RS02970 at 562.921 kb on + strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.057 kb on - strand, within MMP_RS02970 at 563.058 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.060 kb on + strand, within MMP_RS02970 at 563.064 kb on - strand, within MMP_RS02970 at 563.064 kb on - strand, within MMP_RS02970 at 563.065 kb on + strand, within MMP_RS02970 at 563.139 kb on - strand at 563.139 kb on - strand at 563.166 kb on + strand at 563.166 kb on + strand at 563.169 kb on - strand at 563.305 kb on - strand at 563.305 kb on - strand at 563.305 kb on - strand at 563.338 kb on - strand, within MMP_RS02975 at 563.367 kb on + strand, within MMP_RS02975 at 563.368 kb on - strand, within MMP_RS02975 at 563.525 kb on + strand, within MMP_RS02975 at 563.565 kb on + strand, within MMP_RS02975 at 563.566 kb on - strand, within MMP_RS02975 at 563.650 kb on + strand, within MMP_RS02975 at 563.772 kb on + strand at 563.772 kb on + strand at 563.776 kb on - strand at 563.776 kb on - strand at 563.887 kb on - strand at 564.120 kb on - strand at 564.213 kb on - strand at 564.422 kb on - strand at 564.495 kb on - strand at 564.495 kb on - strand at 564.512 kb on - strand at 564.537 kb on - strand at 564.553 kb on - strand at 564.569 kb on - strand at 564.569 kb on - strand at 564.588 kb on - strand at 564.680 kb on + strand at 564.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 562,483 + -0.2 562,509 - -0.2 562,515 + +0.5 562,559 - +0.2 562,567 + +0.0 562,568 - -0.1 562,568 - +0.1 562,568 - +0.6 562,576 - -0.1 562,577 + -0.3 562,584 + -0.4 562,622 + +0.3 562,634 + +0.3 562,683 - +0.6 562,860 - MMP_RS02970 0.15 +0.7 562,860 - MMP_RS02970 0.15 +0.3 562,918 + MMP_RS02970 0.35 +0.2 562,918 + MMP_RS02970 0.35 +0.4 562,921 + MMP_RS02970 0.36 +0.7 563,057 - MMP_RS02970 0.82 +0.2 563,057 - MMP_RS02970 0.82 -0.1 563,057 - MMP_RS02970 0.82 +0.1 563,058 + MMP_RS02970 0.83 -0.5 563,060 + MMP_RS02970 0.84 +0.2 563,060 + MMP_RS02970 0.84 -0.2 563,060 + MMP_RS02970 0.84 -0.0 563,064 - MMP_RS02970 0.85 +0.3 563,064 - MMP_RS02970 0.85 +0.4 563,065 + MMP_RS02970 0.85 +0.5 563,139 - +0.9 563,139 - -1.6 563,166 + +0.2 563,166 + -0.3 563,169 - -0.1 563,305 - +0.3 563,305 - -0.0 563,305 - +0.3 563,338 - MMP_RS02975 0.17 -0.2 563,367 + MMP_RS02975 0.23 -0.2 563,368 - MMP_RS02975 0.23 -0.0 563,525 + MMP_RS02975 0.55 -0.2 563,565 + MMP_RS02975 0.64 -0.1 563,566 - MMP_RS02975 0.64 +0.1 563,650 + MMP_RS02975 0.81 -0.6 563,772 + -0.6 563,772 + +0.1 563,776 - -0.4 563,776 - -0.1 563,887 - -1.6 564,120 - -1.3 564,213 - -0.0 564,422 - -3.0 564,495 - -2.3 564,495 - -0.9 564,512 - -1.1 564,537 - -1.2 564,553 - -1.2 564,569 - -0.0 564,569 - -1.7 564,588 - -1.4 564,680 + -1.1 564,696 + -1.6
Or see this region's nucleotide sequence