Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01970

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01955 and MMP_RS01960 are separated by 12 nucleotidesMMP_RS01960 and MMP_RS01965 are separated by 18 nucleotidesMMP_RS01965 and MMP_RS01970 are separated by 268 nucleotidesMMP_RS01970 and MMP_RS01975 are separated by 44 nucleotides MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086 _RS01955 MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338 _RS01960 MMP_RS01965: MMP_RS01965 - DUF1616 domain-containing protein, at 364,357 to 364,705 _RS01965 MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938 _RS01970 MMP_RS01975: MMP_RS01975 - hypothetical protein, at 366,983 to 368,389 _RS01975 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -2 -1 0 1 2at 364.269 kb on - strand, within MMP_RS01960at 364.276 kb on - strand, within MMP_RS01960at 364.321 kb on - strandat 364.321 kb on - strandat 364.322 kb on + strandat 364.324 kb on + strandat 364.324 kb on + strandat 364.326 kb on - strandat 364.466 kb on + strand, within MMP_RS01965at 364.481 kb on + strand, within MMP_RS01965at 364.555 kb on + strand, within MMP_RS01965at 364.566 kb on - strand, within MMP_RS01965at 364.589 kb on + strand, within MMP_RS01965at 364.628 kb on + strand, within MMP_RS01965at 364.676 kb on - strandat 364.838 kb on - strandat 364.838 kb on - strandat 364.839 kb on + strandat 364.843 kb on - strandat 364.898 kb on + strandat 364.899 kb on - strandat 364.900 kb on + strandat 364.905 kb on - strandat 364.906 kb on + strandat 364.908 kb on + strandat 364.916 kb on - strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.917 kb on + strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.918 kb on - strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.919 kb on + strandat 364.922 kb on - strandat 364.923 kb on + strandat 364.931 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.949 kb on - strandat 364.958 kb on - strandat 364.971 kb on + strandat 365.012 kb on + strandat 365.023 kb on - strandat 365.023 kb on - strandat 365.024 kb on + strandat 365.027 kb on - strandat 365.194 kb on - strand, within MMP_RS01970at 365.274 kb on - strand, within MMP_RS01970at 365.421 kb on - strand, within MMP_RS01970at 365.460 kb on + strand, within MMP_RS01970at 365.580 kb on + strand, within MMP_RS01970at 365.583 kb on + strand, within MMP_RS01970at 365.665 kb on - strand, within MMP_RS01970at 365.817 kb on + strand, within MMP_RS01970at 365.864 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.913 kb on - strand, within MMP_RS01970at 365.917 kb on + strand, within MMP_RS01970at 365.919 kb on + strand, within MMP_RS01970at 365.919 kb on + strand, within MMP_RS01970at 365.931 kb on + strand, within MMP_RS01970at 365.936 kb on + strand, within MMP_RS01970at 365.945 kb on - strand, within MMP_RS01970at 365.976 kb on + strand, within MMP_RS01970at 366.060 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.063 kb on + strand, within MMP_RS01970at 366.079 kb on + strand, within MMP_RS01970at 366.106 kb on - strand, within MMP_RS01970at 366.134 kb on - strand, within MMP_RS01970at 366.142 kb on - strand, within MMP_RS01970at 366.143 kb on + strand, within MMP_RS01970at 366.487 kb on + strand, within MMP_RS01970at 366.515 kb on - strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.578 kb on + strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.634 kb on - strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.635 kb on + strand, within MMP_RS01970at 366.639 kb on + strand, within MMP_RS01970at 366.703 kb on - strand, within MMP_RS01970at 366.704 kb on + strand, within MMP_RS01970at 366.752 kb on + strandat 366.787 kb on - strandat 366.803 kb on + strandat 366.874 kb on - strandat 366.887 kb on + strandat 366.948 kb on - strandat 366.962 kb on - strandat 367.164 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.191 kb on - strand, within MMP_RS01975at 367.193 kb on - strand, within MMP_RS01975at 367.194 kb on + strand, within MMP_RS01975at 367.263 kb on - strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.264 kb on + strand, within MMP_RS01975at 367.312 kb on - strand, within MMP_RS01975at 367.358 kb on - strand, within MMP_RS01975at 367.405 kb on - strand, within MMP_RS01975at 367.406 kb on + strand, within MMP_RS01975at 367.469 kb on - strand, within MMP_RS01975at 367.510 kb on + strand, within MMP_RS01975at 367.536 kb on - strand, within MMP_RS01975at 367.550 kb on + strand, within MMP_RS01975at 367.586 kb on + strand, within MMP_RS01975at 367.603 kb on - strand, within MMP_RS01975at 367.615 kb on - strand, within MMP_RS01975at 367.621 kb on + strand, within MMP_RS01975at 367.681 kb on + strand, within MMP_RS01975at 367.701 kb on + strand, within MMP_RS01975at 367.716 kb on + strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.719 kb on - strand, within MMP_RS01975at 367.720 kb on + strand, within MMP_RS01975at 367.757 kb on - strand, within MMP_RS01975at 367.758 kb on + strand, within MMP_RS01975at 367.775 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.779 kb on - strand, within MMP_RS01975at 367.872 kb on - strand, within MMP_RS01975at 367.909 kb on - strand, within MMP_RS01975

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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364,269 - MMP_RS01960 0.71 -1.5
364,276 - MMP_RS01960 0.74 +0.1
364,321 - +0.4
364,321 - +2.2
364,322 + +0.2
364,324 + -0.1
364,324 + +0.3
364,326 - -0.1
364,466 + MMP_RS01965 0.31 -0.0
364,481 + MMP_RS01965 0.36 +0.1
364,555 + MMP_RS01965 0.57 +0.2
364,566 - MMP_RS01965 0.60 +0.5
364,589 + MMP_RS01965 0.66 +0.0
364,628 + MMP_RS01965 0.78 -0.3
364,676 - -0.0
364,838 - -0.0
364,838 - -0.3
364,839 + -0.4
364,843 - -0.1
364,898 + +0.4
364,899 - -0.4
364,900 + +0.1
364,905 - -1.7
364,906 + -0.4
364,908 + +0.1
364,916 - -1.0
364,917 + -0.2
364,917 + +0.1
364,917 + -0.8
364,917 + -0.4
364,918 - -0.8
364,918 - -0.6
364,918 - -0.5
364,918 - -0.7
364,918 - -0.1
364,918 - -1.3
364,919 + +0.7
364,919 + +0.4
364,919 + -0.3
364,919 + -0.2
364,919 + -0.6
364,922 - +0.2
364,923 + -0.5
364,931 - -1.0
364,949 - -0.0
364,949 - -0.7
364,949 - -0.5
364,949 - -0.4
364,958 - -0.8
364,971 + -0.9
365,012 + -0.7
365,023 - -1.7
365,023 - +0.1
365,024 + -0.2
365,027 - -0.3
365,194 - MMP_RS01970 0.11 -1.3
365,274 - MMP_RS01970 0.15 -0.5
365,421 - MMP_RS01970 0.23 -1.2
365,460 + MMP_RS01970 0.25 +0.2
365,580 + MMP_RS01970 0.31 -0.5
365,583 + MMP_RS01970 0.31 +0.0
365,665 - MMP_RS01970 0.35 -0.1
365,817 + MMP_RS01970 0.43 -0.6
365,864 - MMP_RS01970 0.45 -0.6
365,913 - MMP_RS01970 0.48 -0.8
365,913 - MMP_RS01970 0.48 -1.2
365,913 - MMP_RS01970 0.48 -0.2
365,917 + MMP_RS01970 0.48 -0.7
365,919 + MMP_RS01970 0.48 -0.7
365,919 + MMP_RS01970 0.48 -0.1
365,931 + MMP_RS01970 0.49 -0.9
365,936 + MMP_RS01970 0.49 -0.8
365,945 - MMP_RS01970 0.49 -0.4
365,976 + MMP_RS01970 0.51 -1.1
366,060 + MMP_RS01970 0.55 -0.3
366,063 + MMP_RS01970 0.55 -0.6
366,063 + MMP_RS01970 0.55 -0.6
366,079 + MMP_RS01970 0.56 -0.7
366,106 - MMP_RS01970 0.58 -0.6
366,134 - MMP_RS01970 0.59 -0.2
366,142 - MMP_RS01970 0.59 -1.2
366,143 + MMP_RS01970 0.59 -0.4
366,487 + MMP_RS01970 0.77 -0.1
366,515 - MMP_RS01970 0.78 -0.5
366,578 + MMP_RS01970 0.82 +0.0
366,578 + MMP_RS01970 0.82 -0.7
366,578 + MMP_RS01970 0.82 -0.7
366,578 + MMP_RS01970 0.82 -1.9
366,634 - MMP_RS01970 0.84 -0.2
366,634 - MMP_RS01970 0.84 -0.9
366,634 - MMP_RS01970 0.84 -0.6
366,634 - MMP_RS01970 0.84 -0.0
366,634 - MMP_RS01970 0.84 -1.0
366,634 - MMP_RS01970 0.84 -0.3
366,635 + MMP_RS01970 0.85 -1.3
366,635 + MMP_RS01970 0.85 +0.0
366,635 + MMP_RS01970 0.85 -1.5
366,635 + MMP_RS01970 0.85 -0.1
366,635 + MMP_RS01970 0.85 -0.4
366,635 + MMP_RS01970 0.85 -0.6
366,639 + MMP_RS01970 0.85 -0.9
366,703 - MMP_RS01970 0.88 -0.3
366,704 + MMP_RS01970 0.88 -0.7
366,752 + +0.2
366,787 - -0.6
366,803 + +0.2
366,874 - -0.8
366,887 + -0.7
366,948 - +0.0
366,962 - +0.0
367,164 - MMP_RS01975 0.13 -0.1
367,191 - MMP_RS01975 0.15 -0.0
367,191 - MMP_RS01975 0.15 -1.1
367,193 - MMP_RS01975 0.15 -0.2
367,194 + MMP_RS01975 0.15 -0.9
367,263 - MMP_RS01975 0.20 -0.5
367,264 + MMP_RS01975 0.20 -0.3
367,264 + MMP_RS01975 0.20 -0.1
367,264 + MMP_RS01975 0.20 -0.5
367,312 - MMP_RS01975 0.23 -0.5
367,358 - MMP_RS01975 0.27 -0.3
367,405 - MMP_RS01975 0.30 -0.1
367,406 + MMP_RS01975 0.30 -1.2
367,469 - MMP_RS01975 0.35 +0.0
367,510 + MMP_RS01975 0.37 +1.0
367,536 - MMP_RS01975 0.39 -0.0
367,550 + MMP_RS01975 0.40 -0.6
367,586 + MMP_RS01975 0.43 -0.2
367,603 - MMP_RS01975 0.44 -0.3
367,615 - MMP_RS01975 0.45 -0.0
367,621 + MMP_RS01975 0.45 -0.8
367,681 + MMP_RS01975 0.50 +0.2
367,701 + MMP_RS01975 0.51 -0.3
367,716 + MMP_RS01975 0.52 -0.0
367,719 - MMP_RS01975 0.52 -0.3
367,719 - MMP_RS01975 0.52 -0.0
367,720 + MMP_RS01975 0.52 -0.1
367,757 - MMP_RS01975 0.55 -0.3
367,758 + MMP_RS01975 0.55 +0.4
367,775 - MMP_RS01975 0.56 +0.1
367,779 - MMP_RS01975 0.57 -0.5
367,779 - MMP_RS01975 0.57 +0.1
367,779 - MMP_RS01975 0.57 +0.1
367,872 - MMP_RS01975 0.63 +0.0
367,909 - MMP_RS01975 0.66 -0.5

Or see this region's nucleotide sequence