Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01950 and MMP_RS01955 are separated by 188 nucleotides MMP_RS01955 and MMP_RS01960 are separated by 12 nucleotides MMP_RS01960 and MMP_RS01965 are separated by 18 nucleotides MMP_RS01965 and MMP_RS01970 are separated by 268 nucleotides
MMP_RS01950: MMP_RS01950 - hypothetical protein, at 361,472 to 363,307
_RS01950
MMP_RS01955: MMP_RS01955 - hypothetical protein, at 363,496 to 364,086
_RS01955
MMP_RS01960: MMP_RS01960 - hypothetical protein, at 364,099 to 364,338
_RS01960
MMP_RS01965: MMP_RS01965 - DUF1616 domain-containing protein, at 364,357 to 364,705
_RS01965
MMP_RS01970: MMP_RS01970 - TIGR04279 domain-containing protein, at 364,974 to 366,938
_RS01970
Position (kb) 364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.101 kb on + strand, within MMP_RS01950 at 363.114 kb on - strand, within MMP_RS01950 at 363.115 kb on + strand, within MMP_RS01950 at 363.115 kb on + strand, within MMP_RS01950 at 363.122 kb on + strand, within MMP_RS01950 at 363.125 kb on + strand at 363.263 kb on - strand at 363.269 kb on + strand at 363.272 kb on - strand at 363.272 kb on - strand at 363.273 kb on + strand at 363.273 kb on + strand at 363.282 kb on + strand at 363.284 kb on - strand at 363.380 kb on - strand at 363.394 kb on + strand at 363.404 kb on + strand at 363.415 kb on + strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.423 kb on - strand at 363.424 kb on + strand at 363.426 kb on + strand at 363.592 kb on - strand, within MMP_RS01955 at 363.593 kb on + strand, within MMP_RS01955 at 363.593 kb on + strand, within MMP_RS01955 at 363.827 kb on - strand, within MMP_RS01955 at 363.830 kb on - strand, within MMP_RS01955 at 364.269 kb on - strand, within MMP_RS01960 at 364.276 kb on - strand, within MMP_RS01960 at 364.321 kb on - strand at 364.321 kb on - strand at 364.322 kb on + strand at 364.324 kb on + strand at 364.324 kb on + strand at 364.326 kb on - strand at 364.466 kb on + strand, within MMP_RS01965 at 364.481 kb on + strand, within MMP_RS01965 at 364.555 kb on + strand, within MMP_RS01965 at 364.566 kb on - strand, within MMP_RS01965 at 364.589 kb on + strand, within MMP_RS01965 at 364.628 kb on + strand, within MMP_RS01965 at 364.676 kb on - strand at 364.838 kb on - strand at 364.838 kb on - strand at 364.839 kb on + strand at 364.843 kb on - strand at 364.898 kb on + strand at 364.899 kb on - strand at 364.900 kb on + strand at 364.905 kb on - strand at 364.906 kb on + strand at 364.908 kb on + strand at 364.916 kb on - strand at 364.917 kb on + strand at 364.917 kb on + strand at 364.917 kb on + strand at 364.917 kb on + strand at 364.918 kb on - strand at 364.918 kb on - strand at 364.918 kb on - strand at 364.918 kb on - strand at 364.918 kb on - strand at 364.918 kb on - strand at 364.919 kb on + strand at 364.919 kb on + strand at 364.919 kb on + strand at 364.919 kb on + strand at 364.919 kb on + strand at 364.922 kb on - strand at 364.923 kb on + strand at 364.931 kb on - strand at 364.949 kb on - strand at 364.949 kb on - strand at 364.949 kb on - strand at 364.949 kb on - strand at 364.958 kb on - strand at 364.971 kb on + strand at 365.012 kb on + strand at 365.023 kb on - strand at 365.023 kb on - strand at 365.024 kb on + strand at 365.027 kb on - strand at 365.194 kb on - strand, within MMP_RS01970 at 365.274 kb on - strand, within MMP_RS01970
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 363,101 + MMP_RS01950 0.89 -0.4 363,114 - MMP_RS01950 0.89 +0.0 363,115 + MMP_RS01950 0.89 +0.1 363,115 + MMP_RS01950 0.89 +0.1 363,122 + MMP_RS01950 0.90 -0.1 363,125 + -0.5 363,263 - -0.0 363,269 + +0.7 363,272 - -0.7 363,272 - -1.0 363,273 + -1.1 363,273 + -1.0 363,282 + +0.7 363,284 - -1.0 363,380 - -1.1 363,394 + +0.2 363,404 + -1.0 363,415 + -0.1 363,423 - +0.6 363,423 - +0.6 363,423 - +0.1 363,423 - -0.7 363,424 + -0.3 363,426 + -0.4 363,592 - MMP_RS01955 0.16 -0.4 363,593 + MMP_RS01955 0.16 -0.1 363,593 + MMP_RS01955 0.16 -0.3 363,827 - MMP_RS01955 0.56 -0.3 363,830 - MMP_RS01955 0.57 -2.8 364,269 - MMP_RS01960 0.71 -1.5 364,276 - MMP_RS01960 0.74 +0.1 364,321 - +0.4 364,321 - +2.2 364,322 + +0.2 364,324 + -0.1 364,324 + +0.3 364,326 - -0.1 364,466 + MMP_RS01965 0.31 -0.0 364,481 + MMP_RS01965 0.36 +0.1 364,555 + MMP_RS01965 0.57 +0.2 364,566 - MMP_RS01965 0.60 +0.5 364,589 + MMP_RS01965 0.66 +0.0 364,628 + MMP_RS01965 0.78 -0.3 364,676 - -0.0 364,838 - -0.0 364,838 - -0.3 364,839 + -0.4 364,843 - -0.1 364,898 + +0.4 364,899 - -0.4 364,900 + +0.1 364,905 - -1.7 364,906 + -0.4 364,908 + +0.1 364,916 - -1.0 364,917 + -0.2 364,917 + +0.1 364,917 + -0.8 364,917 + -0.4 364,918 - -0.8 364,918 - -0.6 364,918 - -0.5 364,918 - -0.7 364,918 - -0.1 364,918 - -1.3 364,919 + +0.7 364,919 + +0.4 364,919 + -0.3 364,919 + -0.2 364,919 + -0.6 364,922 - +0.2 364,923 + -0.5 364,931 - -1.0 364,949 - -0.0 364,949 - -0.7 364,949 - -0.5 364,949 - -0.4 364,958 - -0.8 364,971 + -0.9 365,012 + -0.7 365,023 - -1.7 365,023 - +0.1 365,024 + -0.2 365,027 - -0.3 365,194 - MMP_RS01970 0.11 -1.3 365,274 - MMP_RS01970 0.15 -0.5
Or see this region's nucleotide sequence