Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01915 and MMP_RS01920 are separated by 9 nucleotides MMP_RS01920 and MMP_RS01925 are separated by 130 nucleotides
MMP_RS01915: MMP_RS01915 - DUF354 domain-containing protein, at 354,790 to 355,911
_RS01915
MMP_RS01920: MMP_RS01920 - glycosyltransferase family 2 protein, at 355,921 to 356,598
_RS01920
MMP_RS01925: MMP_RS01925 - DUF1616 domain-containing protein, at 356,729 to 357,700
_RS01925
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 354.926 kb on + strand, within MMP_RS01915 at 354.928 kb on - strand, within MMP_RS01915 at 354.928 kb on - strand, within MMP_RS01915 at 354.973 kb on - strand, within MMP_RS01915 at 355.024 kb on - strand, within MMP_RS01915 at 355.024 kb on - strand, within MMP_RS01915 at 355.051 kb on - strand, within MMP_RS01915 at 355.065 kb on - strand, within MMP_RS01915 at 355.091 kb on - strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.092 kb on + strand, within MMP_RS01915 at 355.096 kb on - strand, within MMP_RS01915 at 355.096 kb on - strand, within MMP_RS01915 at 355.111 kb on - strand, within MMP_RS01915 at 355.112 kb on + strand, within MMP_RS01915 at 355.112 kb on + strand, within MMP_RS01915 at 355.167 kb on + strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.169 kb on - strand, within MMP_RS01915 at 355.170 kb on + strand, within MMP_RS01915 at 355.170 kb on + strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.171 kb on - strand, within MMP_RS01915 at 355.172 kb on + strand, within MMP_RS01915 at 355.174 kb on - strand, within MMP_RS01915 at 355.175 kb on + strand, within MMP_RS01915 at 355.175 kb on + strand, within MMP_RS01915 at 355.252 kb on + strand, within MMP_RS01915 at 355.390 kb on - strand, within MMP_RS01915 at 355.390 kb on - strand, within MMP_RS01915 at 355.393 kb on - strand, within MMP_RS01915 at 355.421 kb on - strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.422 kb on + strand, within MMP_RS01915 at 355.425 kb on + strand, within MMP_RS01915 at 355.435 kb on - strand, within MMP_RS01915 at 355.436 kb on + strand, within MMP_RS01915 at 355.440 kb on + strand, within MMP_RS01915 at 355.455 kb on + strand, within MMP_RS01915 at 355.635 kb on + strand, within MMP_RS01915 at 355.654 kb on - strand, within MMP_RS01915 at 355.656 kb on - strand, within MMP_RS01915 at 355.697 kb on + strand, within MMP_RS01915 at 355.708 kb on - strand, within MMP_RS01915 at 355.708 kb on - strand, within MMP_RS01915 at 355.709 kb on + strand, within MMP_RS01915 at 355.751 kb on - strand, within MMP_RS01915 at 355.751 kb on - strand, within MMP_RS01915 at 355.752 kb on + strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.753 kb on - strand, within MMP_RS01915 at 355.754 kb on + strand, within MMP_RS01915 at 355.754 kb on + strand, within MMP_RS01915 at 355.765 kb on - strand, within MMP_RS01915 at 355.772 kb on + strand, within MMP_RS01915 at 355.772 kb on + strand, within MMP_RS01915 at 355.893 kb on - strand at 355.912 kb on + strand at 355.922 kb on - strand at 355.922 kb on - strand at 355.926 kb on + strand at 355.926 kb on + strand at 355.958 kb on - strand at 355.978 kb on - strand at 355.979 kb on + strand at 356.001 kb on - strand, within MMP_RS01920 at 356.002 kb on + strand, within MMP_RS01920 at 356.002 kb on + strand, within MMP_RS01920 at 356.002 kb on + strand, within MMP_RS01920 at 356.016 kb on + strand, within MMP_RS01920 at 356.016 kb on + strand, within MMP_RS01920 at 356.020 kb on - strand, within MMP_RS01920 at 356.020 kb on - strand, within MMP_RS01920 at 356.021 kb on + strand, within MMP_RS01920 at 356.043 kb on - strand, within MMP_RS01920 at 356.044 kb on + strand, within MMP_RS01920 at 356.062 kb on - strand, within MMP_RS01920 at 356.104 kb on + strand, within MMP_RS01920 at 356.111 kb on + strand, within MMP_RS01920 at 356.142 kb on + strand, within MMP_RS01920 at 356.148 kb on - strand, within MMP_RS01920 at 356.149 kb on + strand, within MMP_RS01920 at 356.202 kb on - strand, within MMP_RS01920 at 356.209 kb on - strand, within MMP_RS01920 at 356.210 kb on + strand, within MMP_RS01920 at 356.210 kb on + strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.211 kb on - strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.212 kb on + strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.213 kb on - strand, within MMP_RS01920 at 356.214 kb on + strand, within MMP_RS01920 at 356.214 kb on + strand, within MMP_RS01920 at 356.214 kb on + strand, within MMP_RS01920 at 356.215 kb on - strand, within MMP_RS01920 at 356.260 kb on - strand, within MMP_RS01920 at 356.260 kb on - strand, within MMP_RS01920 at 356.282 kb on + strand, within MMP_RS01920 at 356.296 kb on + strand, within MMP_RS01920 at 356.315 kb on + strand, within MMP_RS01920 at 356.358 kb on - strand, within MMP_RS01920 at 356.359 kb on + strand, within MMP_RS01920 at 356.359 kb on + strand, within MMP_RS01920 at 356.359 kb on + strand, within MMP_RS01920 at 356.362 kb on - strand, within MMP_RS01920 at 356.375 kb on - strand, within MMP_RS01920 at 356.382 kb on - strand, within MMP_RS01920 at 356.382 kb on - strand, within MMP_RS01920 at 356.382 kb on - strand, within MMP_RS01920 at 356.383 kb on + strand, within MMP_RS01920 at 356.387 kb on + strand, within MMP_RS01920 at 356.430 kb on - strand, within MMP_RS01920 at 356.430 kb on - strand, within MMP_RS01920 at 356.431 kb on + strand, within MMP_RS01920 at 356.439 kb on - strand, within MMP_RS01920 at 356.440 kb on + strand, within MMP_RS01920 at 356.445 kb on - strand, within MMP_RS01920 at 356.448 kb on - strand, within MMP_RS01920 at 356.493 kb on - strand, within MMP_RS01920 at 356.494 kb on + strand, within MMP_RS01920 at 356.494 kb on + strand, within MMP_RS01920 at 356.505 kb on - strand, within MMP_RS01920 at 356.510 kb on + strand, within MMP_RS01920 at 356.512 kb on - strand, within MMP_RS01920 at 356.513 kb on + strand, within MMP_RS01920 at 356.544 kb on - strand at 356.544 kb on - strand at 356.544 kb on - strand at 356.557 kb on - strand at 356.557 kb on - strand at 356.557 kb on - strand at 356.557 kb on - strand at 356.571 kb on + strand at 356.584 kb on + strand at 356.627 kb on + strand at 356.632 kb on - strand at 356.633 kb on + strand at 356.636 kb on - strand at 356.641 kb on - strand at 356.642 kb on + strand at 356.643 kb on - strand at 356.644 kb on + strand at 356.644 kb on + strand at 356.644 kb on + strand at 356.662 kb on - strand at 356.675 kb on - strand at 356.690 kb on + strand at 356.698 kb on - strand at 356.704 kb on + strand at 356.713 kb on - strand at 356.714 kb on + strand at 356.718 kb on - strand at 356.719 kb on + strand at 356.725 kb on - strand at 356.961 kb on - strand, within MMP_RS01925 at 357.007 kb on + strand, within MMP_RS01925 at 357.010 kb on - strand, within MMP_RS01925 at 357.042 kb on - strand, within MMP_RS01925 at 357.042 kb on - strand, within MMP_RS01925 at 357.062 kb on - strand, within MMP_RS01925 at 357.062 kb on - strand, within MMP_RS01925 at 357.062 kb on - strand, within MMP_RS01925 at 357.064 kb on - strand, within MMP_RS01925 at 357.065 kb on + strand, within MMP_RS01925 at 357.065 kb on + strand, within MMP_RS01925 at 357.065 kb on + strand, within MMP_RS01925 at 357.074 kb on + strand, within MMP_RS01925 at 357.079 kb on + strand, within MMP_RS01925 at 357.171 kb on - strand, within MMP_RS01925 at 357.222 kb on - strand, within MMP_RS01925 at 357.287 kb on - strand, within MMP_RS01925 at 357.287 kb on - strand, within MMP_RS01925 at 357.288 kb on + strand, within MMP_RS01925 at 357.343 kb on + strand, within MMP_RS01925 at 357.404 kb on - strand, within MMP_RS01925 at 357.405 kb on + strand, within MMP_RS01925 at 357.409 kb on - strand, within MMP_RS01925 at 357.417 kb on - strand, within MMP_RS01925 at 357.417 kb on - strand, within MMP_RS01925 at 357.431 kb on + strand, within MMP_RS01925 at 357.431 kb on + strand, within MMP_RS01925 at 357.443 kb on - strand, within MMP_RS01925 at 357.443 kb on - strand, within MMP_RS01925 at 357.443 kb on - strand, within MMP_RS01925 at 357.445 kb on - strand, within MMP_RS01925 at 357.446 kb on + strand, within MMP_RS01925 at 357.466 kb on - strand, within MMP_RS01925 at 357.490 kb on - strand, within MMP_RS01925 at 357.536 kb on + strand, within MMP_RS01925 at 357.573 kb on - strand, within MMP_RS01925 at 357.574 kb on + strand, within MMP_RS01925
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 354,926 + MMP_RS01915 0.12 -0.6 354,928 - MMP_RS01915 0.12 -0.2 354,928 - MMP_RS01915 0.12 -0.6 354,973 - MMP_RS01915 0.16 +0.9 355,024 - MMP_RS01915 0.21 -0.0 355,024 - MMP_RS01915 0.21 -2.1 355,051 - MMP_RS01915 0.23 -0.5 355,065 - MMP_RS01915 0.25 -1.5 355,091 - MMP_RS01915 0.27 -0.4 355,092 + MMP_RS01915 0.27 -0.4 355,092 + MMP_RS01915 0.27 -1.3 355,092 + MMP_RS01915 0.27 -1.3 355,096 - MMP_RS01915 0.27 -0.5 355,096 - MMP_RS01915 0.27 +0.4 355,111 - MMP_RS01915 0.29 -1.1 355,112 + MMP_RS01915 0.29 -0.3 355,112 + MMP_RS01915 0.29 -0.7 355,167 + MMP_RS01915 0.34 -0.7 355,169 - MMP_RS01915 0.34 +0.9 355,169 - MMP_RS01915 0.34 -1.8 355,169 - MMP_RS01915 0.34 -1.4 355,169 - MMP_RS01915 0.34 -0.9 355,169 - MMP_RS01915 0.34 -0.7 355,170 + MMP_RS01915 0.34 -1.0 355,170 + MMP_RS01915 0.34 -0.7 355,171 - MMP_RS01915 0.34 -0.6 355,171 - MMP_RS01915 0.34 -1.3 355,171 - MMP_RS01915 0.34 -0.8 355,171 - MMP_RS01915 0.34 -0.6 355,172 + MMP_RS01915 0.34 -1.2 355,174 - MMP_RS01915 0.34 -0.4 355,175 + MMP_RS01915 0.34 -2.2 355,175 + MMP_RS01915 0.34 -0.3 355,252 + MMP_RS01915 0.41 -0.3 355,390 - MMP_RS01915 0.53 -1.9 355,390 - MMP_RS01915 0.53 -1.5 355,393 - MMP_RS01915 0.54 -0.7 355,421 - MMP_RS01915 0.56 +0.1 355,422 + MMP_RS01915 0.56 -1.0 355,422 + MMP_RS01915 0.56 -0.3 355,422 + MMP_RS01915 0.56 -0.8 355,425 + MMP_RS01915 0.57 -0.0 355,435 - MMP_RS01915 0.57 -1.1 355,436 + MMP_RS01915 0.58 -0.3 355,440 + MMP_RS01915 0.58 +0.1 355,455 + MMP_RS01915 0.59 +0.9 355,635 + MMP_RS01915 0.75 -1.1 355,654 - MMP_RS01915 0.77 +0.2 355,656 - MMP_RS01915 0.77 -1.4 355,697 + MMP_RS01915 0.81 +0.1 355,708 - MMP_RS01915 0.82 -0.7 355,708 - MMP_RS01915 0.82 -0.2 355,709 + MMP_RS01915 0.82 -0.4 355,751 - MMP_RS01915 0.86 -0.8 355,751 - MMP_RS01915 0.86 -0.2 355,752 + MMP_RS01915 0.86 -0.7 355,753 - MMP_RS01915 0.86 -0.8 355,753 - MMP_RS01915 0.86 -0.7 355,753 - MMP_RS01915 0.86 -0.3 355,754 + MMP_RS01915 0.86 -0.5 355,754 + MMP_RS01915 0.86 +0.1 355,765 - MMP_RS01915 0.87 -1.4 355,772 + MMP_RS01915 0.88 -0.4 355,772 + MMP_RS01915 0.88 -0.0 355,893 - -0.6 355,912 + -0.2 355,922 - -0.4 355,922 - -0.7 355,926 + -0.6 355,926 + -0.6 355,958 - -0.6 355,978 - -1.9 355,979 + -1.5 356,001 - MMP_RS01920 0.12 +1.3 356,002 + MMP_RS01920 0.12 -0.8 356,002 + MMP_RS01920 0.12 +0.1 356,002 + MMP_RS01920 0.12 -0.2 356,016 + MMP_RS01920 0.14 -0.8 356,016 + MMP_RS01920 0.14 -0.1 356,020 - MMP_RS01920 0.15 -0.6 356,020 - MMP_RS01920 0.15 -0.5 356,021 + MMP_RS01920 0.15 -1.5 356,043 - MMP_RS01920 0.18 -0.3 356,044 + MMP_RS01920 0.18 -0.4 356,062 - MMP_RS01920 0.21 -0.0 356,104 + MMP_RS01920 0.27 +0.0 356,111 + MMP_RS01920 0.28 -0.2 356,142 + MMP_RS01920 0.33 -2.2 356,148 - MMP_RS01920 0.33 +0.1 356,149 + MMP_RS01920 0.34 -0.8 356,202 - MMP_RS01920 0.41 -0.5 356,209 - MMP_RS01920 0.42 -0.7 356,210 + MMP_RS01920 0.43 -0.6 356,210 + MMP_RS01920 0.43 +0.4 356,211 - MMP_RS01920 0.43 -0.5 356,211 - MMP_RS01920 0.43 -1.7 356,211 - MMP_RS01920 0.43 -0.2 356,211 - MMP_RS01920 0.43 -0.8 356,211 - MMP_RS01920 0.43 -0.4 356,211 - MMP_RS01920 0.43 -0.7 356,211 - MMP_RS01920 0.43 -0.1 356,212 + MMP_RS01920 0.43 -1.0 356,212 + MMP_RS01920 0.43 -0.2 356,212 + MMP_RS01920 0.43 -0.5 356,212 + MMP_RS01920 0.43 -0.8 356,212 + MMP_RS01920 0.43 -0.0 356,212 + MMP_RS01920 0.43 -0.8 356,213 - MMP_RS01920 0.43 -0.3 356,213 - MMP_RS01920 0.43 -0.5 356,213 - MMP_RS01920 0.43 +0.0 356,213 - MMP_RS01920 0.43 -0.4 356,213 - MMP_RS01920 0.43 -2.1 356,213 - MMP_RS01920 0.43 +0.1 356,214 + MMP_RS01920 0.43 -0.0 356,214 + MMP_RS01920 0.43 -0.2 356,214 + MMP_RS01920 0.43 +0.2 356,215 - MMP_RS01920 0.43 -0.3 356,260 - MMP_RS01920 0.50 -0.3 356,260 - MMP_RS01920 0.50 -1.4 356,282 + MMP_RS01920 0.53 -0.4 356,296 + MMP_RS01920 0.55 -1.1 356,315 + MMP_RS01920 0.58 -0.1 356,358 - MMP_RS01920 0.64 -0.7 356,359 + MMP_RS01920 0.65 -0.7 356,359 + MMP_RS01920 0.65 -0.3 356,359 + MMP_RS01920 0.65 -0.5 356,362 - MMP_RS01920 0.65 -0.8 356,375 - MMP_RS01920 0.67 +0.8 356,382 - MMP_RS01920 0.68 -1.0 356,382 - MMP_RS01920 0.68 -0.6 356,382 - MMP_RS01920 0.68 -0.7 356,383 + MMP_RS01920 0.68 +0.7 356,387 + MMP_RS01920 0.69 -0.9 356,430 - MMP_RS01920 0.75 -0.8 356,430 - MMP_RS01920 0.75 -0.7 356,431 + MMP_RS01920 0.75 +0.1 356,439 - MMP_RS01920 0.76 -1.6 356,440 + MMP_RS01920 0.77 -0.7 356,445 - MMP_RS01920 0.77 -0.3 356,448 - MMP_RS01920 0.78 -1.0 356,493 - MMP_RS01920 0.84 -0.5 356,494 + MMP_RS01920 0.85 -1.7 356,494 + MMP_RS01920 0.85 -1.5 356,505 - MMP_RS01920 0.86 -0.6 356,510 + MMP_RS01920 0.87 -0.7 356,512 - MMP_RS01920 0.87 -2.2 356,513 + MMP_RS01920 0.87 -1.0 356,544 - -0.7 356,544 - -1.2 356,544 - -1.7 356,557 - -0.7 356,557 - -1.1 356,557 - -0.9 356,557 - -0.4 356,571 + -1.6 356,584 + -1.2 356,627 + -0.0 356,632 - -0.0 356,633 + -0.3 356,636 - -0.1 356,641 - -1.0 356,642 + -0.8 356,643 - -0.5 356,644 + -0.8 356,644 + -0.6 356,644 + -1.1 356,662 - +0.2 356,675 - +0.5 356,690 + +0.1 356,698 - +0.1 356,704 + +0.3 356,713 - +0.1 356,714 + -0.8 356,718 - -0.4 356,719 + -0.1 356,725 - -1.1 356,961 - MMP_RS01925 0.24 +0.6 357,007 + MMP_RS01925 0.29 -1.8 357,010 - MMP_RS01925 0.29 +0.3 357,042 - MMP_RS01925 0.32 -0.3 357,042 - MMP_RS01925 0.32 -2.5 357,062 - MMP_RS01925 0.34 -1.0 357,062 - MMP_RS01925 0.34 -3.1 357,062 - MMP_RS01925 0.34 -0.2 357,064 - MMP_RS01925 0.34 -1.6 357,065 + MMP_RS01925 0.35 -1.6 357,065 + MMP_RS01925 0.35 -2.4 357,065 + MMP_RS01925 0.35 -1.3 357,074 + MMP_RS01925 0.35 -0.7 357,079 + MMP_RS01925 0.36 -0.6 357,171 - MMP_RS01925 0.45 +0.4 357,222 - MMP_RS01925 0.51 +0.1 357,287 - MMP_RS01925 0.57 -1.1 357,287 - MMP_RS01925 0.57 -0.2 357,288 + MMP_RS01925 0.58 -0.7 357,343 + MMP_RS01925 0.63 -0.4 357,404 - MMP_RS01925 0.69 -1.1 357,405 + MMP_RS01925 0.70 -0.8 357,409 - MMP_RS01925 0.70 -0.0 357,417 - MMP_RS01925 0.71 -0.5 357,417 - MMP_RS01925 0.71 +0.1 357,431 + MMP_RS01925 0.72 +0.2 357,431 + MMP_RS01925 0.72 +0.4 357,443 - MMP_RS01925 0.73 -1.9 357,443 - MMP_RS01925 0.73 -0.8 357,443 - MMP_RS01925 0.73 -2.4 357,445 - MMP_RS01925 0.74 -0.7 357,446 + MMP_RS01925 0.74 -1.0 357,466 - MMP_RS01925 0.76 +0.4 357,490 - MMP_RS01925 0.78 -0.8 357,536 + MMP_RS01925 0.83 -0.8 357,573 - MMP_RS01925 0.87 +0.3 357,574 + MMP_RS01925 0.87 -1.4
Or see this region's nucleotide sequence