Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01895

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01890 and MMP_RS01895 are separated by 23 nucleotidesMMP_RS01895 and MMP_RS01900 overlap by 20 nucleotides MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775 _RS01890 MMP_RS01895: MMP_RS01895 - flippase, at 349,799 to 351,034 _RS01895 MMP_RS01900: MMP_RS01900 - hypothetical protein, at 351,015 to 352,514 _RS01900 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 348.971 kb on - strand, within MMP_RS01890at 349.041 kb on - strand, within MMP_RS01890at 349.268 kb on - strand, within MMP_RS01890at 349.294 kb on - strand, within MMP_RS01890at 349.370 kb on + strand, within MMP_RS01890at 349.384 kb on - strand, within MMP_RS01890at 349.586 kb on + strand, within MMP_RS01890at 349.691 kb on + strandat 349.709 kb on - strandat 349.709 kb on - strandat 349.710 kb on + strandat 349.713 kb on + strandat 349.754 kb on - strandat 349.754 kb on - strandat 349.774 kb on + strandat 349.825 kb on - strandat 349.862 kb on + strandat 349.867 kb on - strandat 349.888 kb on + strandat 349.939 kb on + strand, within MMP_RS01895at 350.028 kb on + strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.035 kb on - strand, within MMP_RS01895at 350.036 kb on + strand, within MMP_RS01895at 350.094 kb on - strand, within MMP_RS01895at 350.132 kb on + strand, within MMP_RS01895at 350.151 kb on + strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.233 kb on - strand, within MMP_RS01895at 350.234 kb on + strand, within MMP_RS01895at 350.234 kb on + strand, within MMP_RS01895at 350.236 kb on + strand, within MMP_RS01895at 350.239 kb on - strand, within MMP_RS01895at 350.239 kb on - strand, within MMP_RS01895at 350.240 kb on + strand, within MMP_RS01895at 350.240 kb on + strand, within MMP_RS01895at 350.257 kb on + strand, within MMP_RS01895at 350.261 kb on + strand, within MMP_RS01895at 350.326 kb on - strand, within MMP_RS01895at 350.327 kb on + strand, within MMP_RS01895at 350.356 kb on - strand, within MMP_RS01895at 350.360 kb on - strand, within MMP_RS01895at 350.362 kb on - strand, within MMP_RS01895at 350.362 kb on - strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.363 kb on + strand, within MMP_RS01895at 350.366 kb on - strand, within MMP_RS01895at 350.367 kb on + strand, within MMP_RS01895at 350.367 kb on + strand, within MMP_RS01895at 350.378 kb on - strand, within MMP_RS01895at 350.422 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.456 kb on - strand, within MMP_RS01895at 350.457 kb on + strand, within MMP_RS01895at 350.460 kb on - strand, within MMP_RS01895at 350.470 kb on - strand, within MMP_RS01895at 350.474 kb on - strand, within MMP_RS01895at 350.477 kb on - strand, within MMP_RS01895at 350.477 kb on - strand, within MMP_RS01895at 350.489 kb on + strand, within MMP_RS01895at 350.532 kb on - strand, within MMP_RS01895at 350.533 kb on + strand, within MMP_RS01895at 350.546 kb on - strand, within MMP_RS01895at 350.571 kb on - strand, within MMP_RS01895at 350.587 kb on + strand, within MMP_RS01895at 350.589 kb on - strand, within MMP_RS01895at 350.589 kb on - strand, within MMP_RS01895at 350.590 kb on + strand, within MMP_RS01895at 350.657 kb on + strand, within MMP_RS01895at 350.668 kb on - strand, within MMP_RS01895at 350.785 kb on + strand, within MMP_RS01895at 350.865 kb on + strand, within MMP_RS01895at 350.884 kb on - strand, within MMP_RS01895at 350.885 kb on + strand, within MMP_RS01895at 350.885 kb on + strand, within MMP_RS01895at 350.957 kb on + strandat 350.961 kb on - strandat 350.961 kb on - strandat 351.053 kb on + strandat 351.054 kb on - strandat 351.054 kb on - strandat 351.055 kb on + strandat 351.154 kb on + strandat 351.154 kb on + strandat 351.158 kb on - strandat 351.158 kb on - strandat 351.158 kb on - strandat 351.159 kb on + strandat 351.159 kb on + strandat 351.164 kb on + strandat 351.195 kb on - strand, within MMP_RS01900at 351.196 kb on + strand, within MMP_RS01900at 351.196 kb on + strand, within MMP_RS01900at 351.197 kb on - strand, within MMP_RS01900at 351.198 kb on + strand, within MMP_RS01900at 351.268 kb on - strand, within MMP_RS01900at 351.268 kb on - strand, within MMP_RS01900at 351.269 kb on + strand, within MMP_RS01900at 351.280 kb on - strand, within MMP_RS01900at 351.280 kb on - strand, within MMP_RS01900at 351.281 kb on + strand, within MMP_RS01900at 351.302 kb on + strand, within MMP_RS01900at 351.302 kb on + strand, within MMP_RS01900at 351.304 kb on + strand, within MMP_RS01900at 351.331 kb on + strand, within MMP_RS01900at 351.355 kb on - strand, within MMP_RS01900at 351.356 kb on + strand, within MMP_RS01900at 351.362 kb on + strand, within MMP_RS01900at 351.362 kb on + strand, within MMP_RS01900at 351.433 kb on + strand, within MMP_RS01900at 351.516 kb on - strand, within MMP_RS01900at 351.542 kb on - strand, within MMP_RS01900at 351.565 kb on + strand, within MMP_RS01900at 351.637 kb on - strand, within MMP_RS01900at 351.638 kb on + strand, within MMP_RS01900at 351.639 kb on - strand, within MMP_RS01900at 351.640 kb on + strand, within MMP_RS01900at 351.669 kb on + strand, within MMP_RS01900at 351.672 kb on - strand, within MMP_RS01900at 351.686 kb on + strand, within MMP_RS01900at 351.699 kb on - strand, within MMP_RS01900at 351.700 kb on + strand, within MMP_RS01900at 351.721 kb on - strand, within MMP_RS01900at 351.721 kb on - strand, within MMP_RS01900at 351.721 kb on - strand, within MMP_RS01900at 351.728 kb on - strand, within MMP_RS01900at 351.728 kb on - strandat 351.733 kb on - strand, within MMP_RS01900at 351.805 kb on + strand, within MMP_RS01900at 351.809 kb on - strand, within MMP_RS01900at 351.812 kb on + strand, within MMP_RS01900at 351.819 kb on + strand, within MMP_RS01900at 351.819 kb on + strand, within MMP_RS01900at 351.821 kb on - strand, within MMP_RS01900at 351.856 kb on + strand, within MMP_RS01900at 351.875 kb on - strand, within MMP_RS01900at 351.885 kb on - strand, within MMP_RS01900at 351.893 kb on - strand, within MMP_RS01900at 351.893 kb on - strand, within MMP_RS01900at 351.894 kb on + strand, within MMP_RS01900at 351.894 kb on + strand, within MMP_RS01900at 351.897 kb on - strand, within MMP_RS01900at 351.898 kb on + strand, within MMP_RS01900at 351.912 kb on - strand, within MMP_RS01900at 351.967 kb on + strand, within MMP_RS01900at 351.972 kb on + strand, within MMP_RS01900at 351.976 kb on - strand, within MMP_RS01900at 351.976 kb on - strand, within MMP_RS01900at 351.977 kb on + strand, within MMP_RS01900at 352.025 kb on - strand, within MMP_RS01900at 352.026 kb on + strand, within MMP_RS01900at 352.029 kb on - strand, within MMP_RS01900

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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348,971 - MMP_RS01890 0.38 -0.1
349,041 - MMP_RS01890 0.44 -1.4
349,268 - MMP_RS01890 0.61 +2.9
349,294 - MMP_RS01890 0.63 -1.2
349,370 + MMP_RS01890 0.69 -1.0
349,384 - MMP_RS01890 0.70 -1.1
349,586 + MMP_RS01890 0.85 -2.1
349,691 + +0.8
349,709 - +0.3
349,709 - -0.6
349,710 + -1.0
349,713 + -0.0
349,754 - +0.9
349,754 - -1.8
349,774 + -0.3
349,825 - -0.9
349,862 + -0.5
349,867 - -0.2
349,888 + -0.7
349,939 + MMP_RS01895 0.11 -0.5
350,028 + MMP_RS01895 0.19 -2.4
350,035 - MMP_RS01895 0.19 -0.6
350,035 - MMP_RS01895 0.19 -0.4
350,035 - MMP_RS01895 0.19 +1.4
350,036 + MMP_RS01895 0.19 -0.0
350,094 - MMP_RS01895 0.24 -0.6
350,132 + MMP_RS01895 0.27 -0.4
350,151 + MMP_RS01895 0.28 -0.5
350,233 - MMP_RS01895 0.35 -1.0
350,233 - MMP_RS01895 0.35 -0.5
350,233 - MMP_RS01895 0.35 -0.5
350,233 - MMP_RS01895 0.35 -1.3
350,234 + MMP_RS01895 0.35 -1.5
350,234 + MMP_RS01895 0.35 -0.9
350,236 + MMP_RS01895 0.35 +0.1
350,239 - MMP_RS01895 0.36 -1.7
350,239 - MMP_RS01895 0.36 +0.1
350,240 + MMP_RS01895 0.36 -1.1
350,240 + MMP_RS01895 0.36 -1.0
350,257 + MMP_RS01895 0.37 -1.2
350,261 + MMP_RS01895 0.37 -1.2
350,326 - MMP_RS01895 0.43 -0.3
350,327 + MMP_RS01895 0.43 -0.6
350,356 - MMP_RS01895 0.45 -0.2
350,360 - MMP_RS01895 0.45 +0.9
350,362 - MMP_RS01895 0.46 +0.2
350,362 - MMP_RS01895 0.46 -1.6
350,363 + MMP_RS01895 0.46 -0.8
350,363 + MMP_RS01895 0.46 -0.2
350,363 + MMP_RS01895 0.46 -0.1
350,363 + MMP_RS01895 0.46 -0.5
350,366 - MMP_RS01895 0.46 -0.0
350,367 + MMP_RS01895 0.46 +0.0
350,367 + MMP_RS01895 0.46 -0.2
350,378 - MMP_RS01895 0.47 -0.3
350,422 - MMP_RS01895 0.50 -0.7
350,456 - MMP_RS01895 0.53 -0.1
350,456 - MMP_RS01895 0.53 -0.5
350,456 - MMP_RS01895 0.53 +0.2
350,457 + MMP_RS01895 0.53 -1.1
350,460 - MMP_RS01895 0.53 -0.7
350,470 - MMP_RS01895 0.54 -0.9
350,474 - MMP_RS01895 0.55 +0.5
350,477 - MMP_RS01895 0.55 -0.1
350,477 - MMP_RS01895 0.55 -0.1
350,489 + MMP_RS01895 0.56 -1.9
350,532 - MMP_RS01895 0.59 -1.0
350,533 + MMP_RS01895 0.59 -0.3
350,546 - MMP_RS01895 0.60 -0.3
350,571 - MMP_RS01895 0.62 -0.5
350,587 + MMP_RS01895 0.64 -0.3
350,589 - MMP_RS01895 0.64 -1.3
350,589 - MMP_RS01895 0.64 -0.7
350,590 + MMP_RS01895 0.64 -0.1
350,657 + MMP_RS01895 0.69 -0.5
350,668 - MMP_RS01895 0.70 -0.8
350,785 + MMP_RS01895 0.80 -0.7
350,865 + MMP_RS01895 0.86 -0.9
350,884 - MMP_RS01895 0.88 +0.1
350,885 + MMP_RS01895 0.88 -0.8
350,885 + MMP_RS01895 0.88 -0.8
350,957 + -0.8
350,961 - -0.8
350,961 - -0.4
351,053 + -1.3
351,054 - -0.9
351,054 - -0.0
351,055 + +1.7
351,154 + -2.8
351,154 + -0.6
351,158 - -1.7
351,158 - +0.3
351,158 - -0.3
351,159 + -0.3
351,159 + -2.8
351,164 + +0.6
351,195 - MMP_RS01900 0.12 -0.4
351,196 + MMP_RS01900 0.12 -2.1
351,196 + MMP_RS01900 0.12 -0.3
351,197 - MMP_RS01900 0.12 -0.8
351,198 + MMP_RS01900 0.12 -1.4
351,268 - MMP_RS01900 0.17 -1.2
351,268 - MMP_RS01900 0.17 -0.1
351,269 + MMP_RS01900 0.17 -0.7
351,280 - MMP_RS01900 0.18 -0.7
351,280 - MMP_RS01900 0.18 +0.0
351,281 + MMP_RS01900 0.18 -0.5
351,302 + MMP_RS01900 0.19 -1.8
351,302 + MMP_RS01900 0.19 -0.6
351,304 + MMP_RS01900 0.19 -0.4
351,331 + MMP_RS01900 0.21 -0.2
351,355 - MMP_RS01900 0.23 +0.4
351,356 + MMP_RS01900 0.23 -0.0
351,362 + MMP_RS01900 0.23 -0.1
351,362 + MMP_RS01900 0.23 +0.9
351,433 + MMP_RS01900 0.28 -2.2
351,516 - MMP_RS01900 0.33 -2.3
351,542 - MMP_RS01900 0.35 -0.3
351,565 + MMP_RS01900 0.37 -2.5
351,637 - MMP_RS01900 0.41 +1.7
351,638 + MMP_RS01900 0.42 -0.2
351,639 - MMP_RS01900 0.42 -0.4
351,640 + MMP_RS01900 0.42 +1.3
351,669 + MMP_RS01900 0.44 -2.0
351,672 - MMP_RS01900 0.44 -0.3
351,686 + MMP_RS01900 0.45 -1.6
351,699 - MMP_RS01900 0.46 +1.0
351,700 + MMP_RS01900 0.46 +0.0
351,721 - MMP_RS01900 0.47 -0.3
351,721 - MMP_RS01900 0.47 -3.5
351,721 - MMP_RS01900 0.47 -1.6
351,728 - MMP_RS01900 0.48 +0.8
351,728 - +0.9
351,733 - MMP_RS01900 0.48 -0.8
351,805 + MMP_RS01900 0.53 -1.0
351,809 - MMP_RS01900 0.53 -0.0
351,812 + MMP_RS01900 0.53 -1.4
351,819 + MMP_RS01900 0.54 +0.2
351,819 + MMP_RS01900 0.54 -0.2
351,821 - MMP_RS01900 0.54 +0.1
351,856 + MMP_RS01900 0.56 -0.5
351,875 - MMP_RS01900 0.57 +0.7
351,885 - MMP_RS01900 0.58 -0.3
351,893 - MMP_RS01900 0.59 -1.2
351,893 - MMP_RS01900 0.59 -0.6
351,894 + MMP_RS01900 0.59 +0.2
351,894 + MMP_RS01900 0.59 -0.6
351,897 - MMP_RS01900 0.59 -0.4
351,898 + MMP_RS01900 0.59 -1.2
351,912 - MMP_RS01900 0.60 -1.0
351,967 + MMP_RS01900 0.63 +0.7
351,972 + MMP_RS01900 0.64 -0.6
351,976 - MMP_RS01900 0.64 +0.3
351,976 - MMP_RS01900 0.64 -0.5
351,977 + MMP_RS01900 0.64 -0.9
352,025 - MMP_RS01900 0.67 -0.1
352,026 + MMP_RS01900 0.67 -0.1
352,029 - MMP_RS01900 0.68 -2.7

Or see this region's nucleotide sequence