Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01880

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01870 and MMP_RS01875 are separated by 140 nucleotidesMMP_RS01875 and MMP_RS01880 are separated by 1 nucleotidesMMP_RS01880 and MMP_RS01885 overlap by 1 nucleotidesMMP_RS01885 and MMP_RS01890 are separated by 17 nucleotides MMP_RS01870: MMP_RS01870 - acyl-CoA dehydratase activase, at 344,939 to 345,679 _RS01870 MMP_RS01875: MMP_RS01875 - N-acetyltransferase, at 345,820 to 346,410 _RS01875 MMP_RS01880: MMP_RS01880 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 346,412 to 347,515 _RS01880 MMP_RS01885: MMP_RS01885 - Gfo/Idh/MocA family oxidoreductase, at 347,515 to 348,450 _RS01885 MMP_RS01890: MMP_RS01890 - nucleotide sugar dehydrogenase, at 348,468 to 349,775 _RS01890 Position (kb) 346 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 345.485 kb on - strand, within MMP_RS01870at 345.560 kb on - strand, within MMP_RS01870at 345.605 kb on + strand, within MMP_RS01870at 345.614 kb on - strandat 345.671 kb on - strandat 345.729 kb on - strandat 345.735 kb on - strandat 345.739 kb on - strandat 345.739 kb on - strandat 345.740 kb on + strandat 345.743 kb on - strandat 345.756 kb on + strandat 345.757 kb on - strandat 345.774 kb on - strandat 345.774 kb on - strandat 345.774 kb on - strandat 345.775 kb on + strandat 345.775 kb on + strandat 345.783 kb on - strandat 345.789 kb on + strandat 345.816 kb on + strandat 345.826 kb on + strandat 345.829 kb on - strandat 345.883 kb on + strand, within MMP_RS01875at 345.958 kb on - strand, within MMP_RS01875at 345.958 kb on - strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.959 kb on + strand, within MMP_RS01875at 345.960 kb on - strand, within MMP_RS01875at 345.961 kb on + strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.962 kb on - strand, within MMP_RS01875at 345.963 kb on + strand, within MMP_RS01875at 345.963 kb on + strand, within MMP_RS01875at 345.967 kb on + strand, within MMP_RS01875at 345.967 kb on + strand, within MMP_RS01875at 346.016 kb on - strand, within MMP_RS01875at 346.017 kb on + strand, within MMP_RS01875at 346.018 kb on - strand, within MMP_RS01875at 346.019 kb on + strand, within MMP_RS01875at 346.019 kb on + strand, within MMP_RS01875at 346.035 kb on + strand, within MMP_RS01875at 346.067 kb on - strand, within MMP_RS01875at 346.082 kb on - strand, within MMP_RS01875at 346.104 kb on - strand, within MMP_RS01875at 346.167 kb on + strand, within MMP_RS01875at 346.247 kb on - strand, within MMP_RS01875at 346.271 kb on - strand, within MMP_RS01875at 346.272 kb on + strand, within MMP_RS01875at 346.287 kb on - strand, within MMP_RS01875at 346.287 kb on - strand, within MMP_RS01875at 346.288 kb on + strand, within MMP_RS01875at 346.288 kb on + strand, within MMP_RS01875at 346.343 kb on + strand, within MMP_RS01875at 346.350 kb on - strand, within MMP_RS01875at 346.350 kb on - strand, within MMP_RS01875at 346.353 kb on - strandat 346.365 kb on - strandat 346.366 kb on + strandat 346.366 kb on + strandat 346.366 kb on + strandat 346.367 kb on - strandat 346.367 kb on - strandat 346.408 kb on - strandat 346.411 kb on - strandat 346.412 kb on + strandat 346.421 kb on + strandat 346.437 kb on - strandat 346.438 kb on + strandat 346.462 kb on + strandat 346.545 kb on - strand, within MMP_RS01880at 346.645 kb on - strand, within MMP_RS01880at 346.675 kb on + strand, within MMP_RS01880at 346.724 kb on + strand, within MMP_RS01880at 346.724 kb on + strand, within MMP_RS01880at 346.776 kb on - strand, within MMP_RS01880at 346.925 kb on + strand, within MMP_RS01880at 346.964 kb on + strand, within MMP_RS01880at 346.988 kb on + strand, within MMP_RS01880at 347.020 kb on + strand, within MMP_RS01880at 347.052 kb on - strand, within MMP_RS01880at 347.053 kb on + strand, within MMP_RS01880at 347.053 kb on + strand, within MMP_RS01880at 347.056 kb on - strand, within MMP_RS01880at 347.057 kb on + strand, within MMP_RS01880at 347.057 kb on + strand, within MMP_RS01880at 347.065 kb on + strand, within MMP_RS01880at 347.090 kb on + strand, within MMP_RS01880at 347.460 kb on - strandat 347.461 kb on + strandat 347.474 kb on - strandat 347.475 kb on + strandat 347.477 kb on + strandat 347.510 kb on + strandat 347.683 kb on - strand, within MMP_RS01885at 347.685 kb on - strand, within MMP_RS01885at 347.760 kb on + strand, within MMP_RS01885at 347.792 kb on - strand, within MMP_RS01885at 347.892 kb on - strand, within MMP_RS01885at 347.914 kb on + strand, within MMP_RS01885at 348.070 kb on + strand, within MMP_RS01885at 348.156 kb on - strand, within MMP_RS01885at 348.161 kb on - strand, within MMP_RS01885at 348.161 kb on - strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.162 kb on + strand, within MMP_RS01885at 348.181 kb on + strand, within MMP_RS01885at 348.183 kb on - strand, within MMP_RS01885at 348.184 kb on + strand, within MMP_RS01885at 348.184 kb on + strand, within MMP_RS01885at 348.213 kb on + strand, within MMP_RS01885at 348.217 kb on + strand, within MMP_RS01885at 348.241 kb on - strand, within MMP_RS01885at 348.273 kb on + strand, within MMP_RS01885at 348.274 kb on - strand, within MMP_RS01885at 348.275 kb on + strand, within MMP_RS01885

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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345,485 - MMP_RS01870 0.74 -0.1
345,560 - MMP_RS01870 0.84 +0.3
345,605 + MMP_RS01870 0.90 +0.2
345,614 - -0.1
345,671 - +0.3
345,729 - -0.1
345,735 - -0.1
345,739 - +0.3
345,739 - -0.4
345,740 + +0.2
345,743 - -0.1
345,756 + -0.2
345,757 - -0.5
345,774 - -0.7
345,774 - -0.6
345,774 - -0.2
345,775 + +0.9
345,775 + -1.2
345,783 - -0.4
345,789 + -0.6
345,816 + -0.6
345,826 + -0.9
345,829 - +0.0
345,883 + MMP_RS01875 0.11 +0.1
345,958 - MMP_RS01875 0.23 -1.4
345,958 - MMP_RS01875 0.23 -1.1
345,959 + MMP_RS01875 0.24 -0.6
345,959 + MMP_RS01875 0.24 -0.6
345,959 + MMP_RS01875 0.24 -0.8
345,960 - MMP_RS01875 0.24 -1.1
345,961 + MMP_RS01875 0.24 -1.3
345,962 - MMP_RS01875 0.24 -0.6
345,962 - MMP_RS01875 0.24 -0.8
345,962 - MMP_RS01875 0.24 -0.4
345,963 + MMP_RS01875 0.24 -0.3
345,963 + MMP_RS01875 0.24 -0.9
345,967 + MMP_RS01875 0.25 -1.5
345,967 + MMP_RS01875 0.25 +1.0
346,016 - MMP_RS01875 0.33 -0.7
346,017 + MMP_RS01875 0.33 -0.8
346,018 - MMP_RS01875 0.34 -1.3
346,019 + MMP_RS01875 0.34 -0.0
346,019 + MMP_RS01875 0.34 -0.9
346,035 + MMP_RS01875 0.36 -0.2
346,067 - MMP_RS01875 0.42 +0.2
346,082 - MMP_RS01875 0.44 -0.7
346,104 - MMP_RS01875 0.48 +1.0
346,167 + MMP_RS01875 0.59 -1.6
346,247 - MMP_RS01875 0.72 -1.4
346,271 - MMP_RS01875 0.76 -0.1
346,272 + MMP_RS01875 0.76 -0.0
346,287 - MMP_RS01875 0.79 -0.5
346,287 - MMP_RS01875 0.79 -0.0
346,288 + MMP_RS01875 0.79 +0.4
346,288 + MMP_RS01875 0.79 -0.2
346,343 + MMP_RS01875 0.88 -0.5
346,350 - MMP_RS01875 0.90 -0.5
346,350 - MMP_RS01875 0.90 +0.4
346,353 - +0.4
346,365 - -0.6
346,366 + -0.4
346,366 + -0.5
346,366 + +0.5
346,367 - -0.5
346,367 - -0.3
346,408 - -1.0
346,411 - -0.4
346,412 + -3.0
346,421 + -1.1
346,437 - -0.7
346,438 + +0.0
346,462 + -1.2
346,545 - MMP_RS01880 0.12 -1.2
346,645 - MMP_RS01880 0.21 -0.4
346,675 + MMP_RS01880 0.24 -0.8
346,724 + MMP_RS01880 0.28 -0.0
346,724 + MMP_RS01880 0.28 -0.8
346,776 - MMP_RS01880 0.33 -0.9
346,925 + MMP_RS01880 0.46 -0.5
346,964 + MMP_RS01880 0.50 -0.8
346,988 + MMP_RS01880 0.52 +0.4
347,020 + MMP_RS01880 0.55 -1.2
347,052 - MMP_RS01880 0.58 -0.3
347,053 + MMP_RS01880 0.58 -0.2
347,053 + MMP_RS01880 0.58 -0.5
347,056 - MMP_RS01880 0.58 +0.0
347,057 + MMP_RS01880 0.58 +0.1
347,057 + MMP_RS01880 0.58 -1.4
347,065 + MMP_RS01880 0.59 -0.9
347,090 + MMP_RS01880 0.61 -0.8
347,460 - -0.2
347,461 + -0.7
347,474 - -0.1
347,475 + -0.9
347,477 + -1.5
347,510 + -0.3
347,683 - MMP_RS01885 0.18 -0.6
347,685 - MMP_RS01885 0.18 +2.2
347,760 + MMP_RS01885 0.26 -0.8
347,792 - MMP_RS01885 0.30 -0.2
347,892 - MMP_RS01885 0.40 -0.2
347,914 + MMP_RS01885 0.43 -0.7
348,070 + MMP_RS01885 0.59 -0.2
348,156 - MMP_RS01885 0.68 -0.4
348,161 - MMP_RS01885 0.69 -0.6
348,161 - MMP_RS01885 0.69 -0.9
348,162 + MMP_RS01885 0.69 -0.7
348,162 + MMP_RS01885 0.69 -0.5
348,162 + MMP_RS01885 0.69 +0.1
348,181 + MMP_RS01885 0.71 -0.9
348,183 - MMP_RS01885 0.71 -0.3
348,184 + MMP_RS01885 0.71 -0.8
348,184 + MMP_RS01885 0.71 +0.6
348,213 + MMP_RS01885 0.75 -1.0
348,217 + MMP_RS01885 0.75 -0.2
348,241 - MMP_RS01885 0.78 -0.8
348,273 + MMP_RS01885 0.81 -2.2
348,274 - MMP_RS01885 0.81 -0.8
348,275 + MMP_RS01885 0.81 +0.1

Or see this region's nucleotide sequence