Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01495 and MMP_RS01500 are separated by 75 nucleotides MMP_RS01500 and MMP_RS01505 are separated by 12 nucleotides
MMP_RS01495: MMP_RS01495 - TraB/GumN family protein, at 278,367 to 279,509
_RS01495
MMP_RS01500: MMP_RS01500 - CBS domain-containing protein, at 279,585 to 280,046
_RS01500
MMP_RS01505: MMP_RS01505 - hypothetical protein, at 280,059 to 281,036
_RS01505
Position (kb) 279
280
281 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 278.737 kb on + strand, within MMP_RS01495 at 278.766 kb on - strand, within MMP_RS01495 at 278.822 kb on - strand, within MMP_RS01495 at 278.895 kb on - strand, within MMP_RS01495 at 278.895 kb on - strand, within MMP_RS01495 at 278.896 kb on + strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.939 kb on - strand, within MMP_RS01495 at 278.941 kb on - strand, within MMP_RS01495 at 278.942 kb on + strand, within MMP_RS01495 at 278.942 kb on + strand, within MMP_RS01495 at 278.945 kb on - strand, within MMP_RS01495 at 278.946 kb on + strand, within MMP_RS01495 at 279.264 kb on - strand, within MMP_RS01495 at 279.283 kb on - strand, within MMP_RS01495 at 279.283 kb on - strand, within MMP_RS01495 at 279.501 kb on - strand at 279.501 kb on - strand at 279.504 kb on + strand at 279.504 kb on + strand at 279.504 kb on + strand at 279.505 kb on - strand at 279.512 kb on - strand at 279.521 kb on - strand at 279.523 kb on - strand at 279.524 kb on + strand at 279.524 kb on + strand at 279.527 kb on - strand at 279.527 kb on - strand at 279.528 kb on + strand at 279.531 kb on + strand at 279.535 kb on + strand at 279.535 kb on + strand at 279.551 kb on + strand at 279.551 kb on + strand at 279.552 kb on - strand at 279.552 kb on - strand at 279.552 kb on - strand at 279.552 kb on - strand at 279.552 kb on - strand at 279.552 kb on - strand at 279.553 kb on + strand at 279.554 kb on - strand at 279.554 kb on - strand at 279.555 kb on + strand at 279.555 kb on + strand at 279.556 kb on - strand at 279.556 kb on - strand at 279.557 kb on + strand at 279.557 kb on + strand at 279.656 kb on + strand, within MMP_RS01500 at 279.913 kb on - strand, within MMP_RS01500 at 279.914 kb on + strand, within MMP_RS01500 at 280.934 kb on - strand at 280.991 kb on - strand at 280.991 kb on - strand at 280.993 kb on - strand at 280.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 278,737 + MMP_RS01495 0.32 +0.0 278,766 - MMP_RS01495 0.35 -0.3 278,822 - MMP_RS01495 0.40 -0.1 278,895 - MMP_RS01495 0.46 -0.9 278,895 - MMP_RS01495 0.46 -0.3 278,896 + MMP_RS01495 0.46 +0.0 278,939 - MMP_RS01495 0.50 +0.4 278,939 - MMP_RS01495 0.50 -0.9 278,939 - MMP_RS01495 0.50 +0.2 278,941 - MMP_RS01495 0.50 +0.2 278,942 + MMP_RS01495 0.50 -0.1 278,942 + MMP_RS01495 0.50 +0.0 278,945 - MMP_RS01495 0.51 -0.7 278,946 + MMP_RS01495 0.51 -0.3 279,264 - MMP_RS01495 0.78 -0.1 279,283 - MMP_RS01495 0.80 -0.2 279,283 - MMP_RS01495 0.80 -0.4 279,501 - -0.2 279,501 - +0.3 279,504 + -0.8 279,504 + -0.5 279,504 + -0.8 279,505 - -1.5 279,512 - -1.5 279,521 - +0.2 279,523 - -0.7 279,524 + -0.5 279,524 + -0.5 279,527 - -1.1 279,527 - -0.7 279,528 + -1.0 279,531 + -0.4 279,535 + -0.3 279,535 + -0.7 279,551 + -1.1 279,551 + -1.2 279,552 - -1.1 279,552 - -1.1 279,552 - -1.3 279,552 - -1.6 279,552 - -1.2 279,552 - -1.8 279,553 + -1.4 279,554 - -4.7 279,554 - -1.0 279,555 + -1.2 279,555 + -1.3 279,556 - -2.9 279,556 - -1.9 279,557 + -1.3 279,557 + -1.4 279,656 + MMP_RS01500 0.15 -3.3 279,913 - MMP_RS01500 0.71 -3.7 279,914 + MMP_RS01500 0.71 -2.6 280,934 - -1.9 280,991 - -1.1 280,991 - -2.6 280,993 - -0.8 280,994 + -2.5
Or see this region's nucleotide sequence