Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01020 and MMP_RS01025 are separated by 120 nucleotides MMP_RS01025 and MMP_RS01030 are separated by 108 nucleotides MMP_RS01030 and MMP_RS01035 are separated by 14 nucleotides MMP_RS01035 and MMP_RS01040 are separated by 69 nucleotides
MMP_RS01020: MMP_RS01020 - 3 4-dihydroxy-2-butanone-4-phosphate synthase, at 192,407 to 193,150
_RS01020
MMP_RS01025: MMP_RS01025 - DUF120 domain-containing protein, at 193,271 to 193,654
_RS01025
MMP_RS01030: MMP_RS01030 - MTAP family purine nucleoside phosphorylase, at 193,763 to 194,524
_RS01030
MMP_RS01035: MMP_RS01035 - threonylcarbamoyl-AMP synthase, at 194,539 to 195,159
_RS01035
MMP_RS01040: MMP_RS01040 - phosphomethylpyrimidine synthase, at 195,229 to 196,509
_RS01040
Position (kb) 193
194
195 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 193.106 kb on - strand at 193.107 kb on + strand at 193.165 kb on + strand at 193.170 kb on - strand at 193.193 kb on + strand at 193.198 kb on - strand at 193.198 kb on - strand at 193.198 kb on - strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.199 kb on + strand at 193.200 kb on - strand at 193.200 kb on - strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.201 kb on + strand at 193.203 kb on + strand at 193.229 kb on - strand at 193.305 kb on + strand at 193.431 kb on + strand at 193.672 kb on - strand at 193.672 kb on - strand at 193.674 kb on - strand at 193.677 kb on + strand at 193.677 kb on + strand at 193.677 kb on + strand at 193.698 kb on + strand at 193.711 kb on + strand at 193.714 kb on - strand at 193.740 kb on + strand at 193.760 kb on - strand at 193.857 kb on - strand, within MMP_RS01030 at 193.989 kb on - strand, within MMP_RS01030 at 193.989 kb on - strand, within MMP_RS01030 at 194.124 kb on - strand, within MMP_RS01030 at 194.212 kb on + strand, within MMP_RS01030 at 194.407 kb on + strand, within MMP_RS01030 at 194.458 kb on - strand at 194.918 kb on - strand at 195.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 193,106 - -2.8 193,107 + -2.1 193,165 + +1.0 193,170 - +0.6 193,193 + +0.1 193,198 - -0.2 193,198 - -0.5 193,198 - -0.3 193,199 + +0.2 193,199 + -0.1 193,199 + -0.7 193,199 + +0.1 193,199 + +0.4 193,200 - -0.1 193,200 - +0.1 193,201 + +0.1 193,201 + +0.1 193,201 + +0.0 193,201 + -0.5 193,201 + -0.9 193,201 + -0.0 193,203 + -0.1 193,229 - +0.1 193,305 + -1.4 193,431 + +0.3 193,672 - -0.6 193,672 - -0.9 193,674 - -1.2 193,677 + -4.8 193,677 + -2.8 193,677 + -1.6 193,698 + -0.5 193,711 + -1.1 193,714 - -0.9 193,740 + -0.0 193,760 - +0.2 193,857 - MMP_RS01030 0.12 -1.1 193,989 - MMP_RS01030 0.30 -1.2 193,989 - MMP_RS01030 0.30 -0.8 194,124 - MMP_RS01030 0.47 -1.3 194,212 + MMP_RS01030 0.59 +0.6 194,407 + MMP_RS01030 0.85 +0.2 194,458 - -0.9 194,918 - -3.4 195,337 + -3.8
Or see this region's nucleotide sequence