Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00285

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
63,759	-				-1.4
63,804	-				+1.7
63,889	-				+0.1
63,897	-				-0.1
63,898	+				-0.1
63,919	-				-0.1
64,061	-		MMP_RS00280	0.28	+0.2
64,071	-		MMP_RS00280	0.31	-0.2
64,091	-		MMP_RS00280	0.35	+0.1
64,128	-		MMP_RS00280	0.43	+0.2
64,147	-		MMP_RS00280	0.47	+0.1
64,154	+		MMP_RS00280	0.49	+0.2
64,154	+		MMP_RS00280	0.49	-0.1
64,162	-		MMP_RS00280	0.51	-0.0
64,181	+		MMP_RS00280	0.55	-0.3
64,203	+		MMP_RS00280	0.60	+0.1
64,287	-		MMP_RS00280	0.78	-0.1
64,292	-		MMP_RS00280	0.79	-0.5
64,293	+		MMP_RS00280	0.80	-0.2
64,293	+		MMP_RS00280	0.80	+0.7
64,297	-		MMP_RS00280	0.81	+0.3
64,309	+		MMP_RS00280	0.83	+0.2
64,323	-		MMP_RS00280	0.86	+0.2
64,328	+		MMP_RS00280	0.87	+0.2
64,358	-				-0.1
64,358	-				-0.1
64,359	+				-0.1
64,362	-				-0.1
64,464	+				+0.2
64,534	-		MMP_RS00285	0.13	+0.2
64,535	+		MMP_RS00285	0.13	+0.3
64,570	-		MMP_RS00285	0.16	-0.2
64,632	+		MMP_RS00285	0.22	-0.3
64,722	-		MMP_RS00285	0.30	-0.6
64,766	-		MMP_RS00285	0.34	+0.2
64,766	-		MMP_RS00285	0.34	-0.0
64,777	-		MMP_RS00285	0.35	+0.7
64,788	-		MMP_RS00285	0.36	+1.8
64,824	-		MMP_RS00285	0.39	+0.2
65,009	-		MMP_RS00285	0.56	-0.1
65,009	-		MMP_RS00285	0.56	-0.3
65,293	+		MMP_RS00285	0.81	+0.3
65,371	+		MMP_RS00285	0.88	-0.4
65,373	-		MMP_RS00285	0.89	+0.5
65,437	+				+0.5
65,464	-				-0.1
65,464	-				+0.2
65,465	+				-0.2
65,498	-				+0.2
65,499	+				-0.1
65,508	-				-1.4
65,521	-				-0.9
65,522	+				-0.1
65,522	+				-0.0
65,522	+				-0.4
65,523	-				-0.4
65,575	-				-0.9
65,575	-				-1.0
65,575	-				-0.5
65,575	-				-0.5
65,575	-				-1.8
65,577	-				-0.5
65,577	-				-0.9
65,578	+				-0.7
65,578	+				-0.7
65,578	+				-0.4
65,587	-		MMP_RS00290	0.11	-1.5
65,587	-		MMP_RS00290	0.11	-1.2
65,619	-		MMP_RS00290	0.23	-0.6
65,625	-		MMP_RS00290	0.25	-0.4
65,664	-		MMP_RS00290	0.40	-2.0
65,755	-		MMP_RS00290	0.73	-1.2
65,773	-		MMP_RS00290	0.79	-0.2
65,854	-				-2.1
65,855	+				-1.9
65,864	+				-1.9
65,865	-				-1.9
65,866	+				-1.3
65,946	-		MMP_RS00295	0.17	-1.5
66,252	-		MMP_RS00295	0.84	-1.5
66,320	-				-1.5
66,320	-				-4.4