Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00045 and MMP_RS00050 are separated by 38 nucleotides MMP_RS00050 and MMP_RS00055 are separated by 81 nucleotides
MMP_RS00045: MMP_RS00045 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 11,517 to 12,608
_RS00045
MMP_RS00050: MMP_RS00050 - AarF/UbiB family protein, at 12,647 to 13,543
_RS00050
MMP_RS00055: MMP_RS00055 - DUF2254 domain-containing protein, at 13,625 to 15,208
_RS00055
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 11.671 kb on + strand at 11.714 kb on + strand at 11.825 kb on + strand at 12.653 kb on + strand at 12.665 kb on - strand at 12.668 kb on + strand at 12.681 kb on - strand at 12.682 kb on + strand at 12.685 kb on - strand at 12.686 kb on + strand at 12.689 kb on - strand at 12.689 kb on - strand at 12.690 kb on + strand at 12.690 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.695 kb on + strand at 12.699 kb on + strand at 12.729 kb on - strand at 12.758 kb on - strand, within MMP_RS00050 at 12.777 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.782 kb on - strand, within MMP_RS00050 at 12.882 kb on + strand, within MMP_RS00050 at 12.924 kb on - strand, within MMP_RS00050 at 13.004 kb on - strand, within MMP_RS00050 at 13.073 kb on - strand, within MMP_RS00050 at 13.145 kb on + strand, within MMP_RS00050 at 13.168 kb on + strand, within MMP_RS00050 at 13.247 kb on + strand, within MMP_RS00050 at 13.324 kb on - strand, within MMP_RS00050 at 13.431 kb on + strand, within MMP_RS00050 at 13.595 kb on + strand at 13.598 kb on + strand at 13.598 kb on + strand at 13.608 kb on - strand at 13.608 kb on - strand at 13.630 kb on - strand at 13.631 kb on + strand at 13.703 kb on + strand at 13.787 kb on - strand, within MMP_RS00055 at 13.835 kb on - strand, within MMP_RS00055 at 13.849 kb on + strand, within MMP_RS00055 at 13.991 kb on - strand, within MMP_RS00055 at 13.994 kb on + strand, within MMP_RS00055 at 14.033 kb on - strand, within MMP_RS00055 at 14.264 kb on - strand, within MMP_RS00055 at 14.272 kb on + strand, within MMP_RS00055 at 14.283 kb on - strand, within MMP_RS00055 at 14.327 kb on - strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.328 kb on + strand, within MMP_RS00055 at 14.334 kb on - strand, within MMP_RS00055 at 14.345 kb on - strand, within MMP_RS00055 at 14.420 kb on - strand, within MMP_RS00055 at 14.444 kb on - strand, within MMP_RS00055 at 14.448 kb on - strand, within MMP_RS00055
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 11,671 + -1.9 11,714 + -3.1 11,825 + -1.5 12,653 + -1.0 12,665 - -1.8 12,668 + -2.6 12,681 - -0.1 12,682 + -3.6 12,685 - -3.4 12,686 + -1.0 12,689 - -2.7 12,689 - -0.9 12,690 + -2.6 12,690 + -1.6 12,695 + -1.3 12,695 + -1.1 12,695 + -1.4 12,695 + -1.8 12,695 + -2.6 12,695 + -1.1 12,699 + -0.8 12,729 - -1.6 12,758 - MMP_RS00050 0.12 -0.0 12,777 - MMP_RS00050 0.14 -0.8 12,782 - MMP_RS00050 0.15 -1.0 12,782 - MMP_RS00050 0.15 -1.3 12,882 + MMP_RS00050 0.26 -0.7 12,924 - MMP_RS00050 0.31 -1.1 13,004 - MMP_RS00050 0.40 -0.9 13,073 - MMP_RS00050 0.47 +0.1 13,145 + MMP_RS00050 0.56 +0.4 13,168 + MMP_RS00050 0.58 -0.5 13,247 + MMP_RS00050 0.67 -0.5 13,324 - MMP_RS00050 0.75 +0.0 13,431 + MMP_RS00050 0.87 -0.3 13,595 + -0.6 13,598 + -0.9 13,598 + -1.0 13,608 - -0.4 13,608 - -0.4 13,630 - -0.2 13,631 + -0.1 13,703 + +0.4 13,787 - MMP_RS00055 0.10 -0.3 13,835 - MMP_RS00055 0.13 -0.4 13,849 + MMP_RS00055 0.14 -0.1 13,991 - MMP_RS00055 0.23 +0.3 13,994 + MMP_RS00055 0.23 +0.9 14,033 - MMP_RS00055 0.26 +1.0 14,264 - MMP_RS00055 0.40 +0.2 14,272 + MMP_RS00055 0.41 +0.3 14,283 - MMP_RS00055 0.42 +0.1 14,327 - MMP_RS00055 0.44 +0.0 14,328 + MMP_RS00055 0.44 +0.5 14,328 + MMP_RS00055 0.44 +0.9 14,334 - MMP_RS00055 0.45 -0.0 14,345 - MMP_RS00055 0.45 -0.1 14,420 - MMP_RS00055 0.50 +0.0 14,444 - MMP_RS00055 0.52 +0.2 14,448 - MMP_RS00055 0.52 +0.2
Or see this region's nucleotide sequence