Strain Fitness in Pantoea sp. MT58 around IAI47_20935

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20930 and IAI47_20935 are separated by 325 nucleotidesIAI47_20935 and IAI47_20940 are separated by 149 nucleotidesIAI47_20940 and IAI47_20945 are separated by 71 nucleotides IAI47_20930: IAI47_20930 - extracellular solute-binding protein, at 433,372 to 434,592 _20930 IAI47_20935: IAI47_20935 - ABC transporter ATP-binding protein, at 434,918 to 436,036 _20935 IAI47_20940: IAI47_20940 - hypothetical protein, at 436,186 to 436,743 _20940 IAI47_20945: IAI47_20945 - hypothetical protein, at 436,815 to 437,156 _20945 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.990 kb on - strand, within IAI47_20930at 433.990 kb on - strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.066 kb on + strand, within IAI47_20930at 434.066 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.099 kb on + strand, within IAI47_20930at 434.138 kb on + strand, within IAI47_20930at 434.183 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.242 kb on - strand, within IAI47_20930at 434.267 kb on + strand, within IAI47_20930at 434.267 kb on + strand, within IAI47_20930at 434.268 kb on - strand, within IAI47_20930at 434.496 kb on + strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.514 kb on + strandat 434.514 kb on + strandat 434.514 kb on + strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.571 kb on + strandat 434.571 kb on + strandat 434.777 kb on - strandat 434.777 kb on - strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.823 kb on - strandat 434.823 kb on - strandat 434.873 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.926 kb on + strandat 434.927 kb on - strandat 434.992 kb on + strandat 434.992 kb on + strandat 435.040 kb on + strand, within IAI47_20935at 435.203 kb on - strand, within IAI47_20935at 435.223 kb on - strand, within IAI47_20935at 435.305 kb on - strand, within IAI47_20935at 435.310 kb on + strand, within IAI47_20935at 435.311 kb on - strand, within IAI47_20935at 435.367 kb on + strand, within IAI47_20935at 435.382 kb on + strand, within IAI47_20935at 435.382 kb on + strand, within IAI47_20935at 435.383 kb on - strand, within IAI47_20935at 435.383 kb on - strand, within IAI47_20935at 435.430 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.542 kb on + strand, within IAI47_20935at 435.543 kb on - strand, within IAI47_20935at 435.581 kb on + strand, within IAI47_20935at 435.582 kb on - strand, within IAI47_20935at 435.582 kb on - strand, within IAI47_20935at 435.584 kb on + strand, within IAI47_20935at 435.584 kb on + strand, within IAI47_20935at 435.585 kb on - strand, within IAI47_20935at 435.628 kb on + strand, within IAI47_20935at 435.628 kb on + strand, within IAI47_20935at 435.628 kb on + strand, within IAI47_20935at 435.628 kb on + strand, within IAI47_20935at 435.628 kb on + strand, within IAI47_20935at 435.629 kb on - strand, within IAI47_20935at 435.691 kb on - strand, within IAI47_20935at 435.691 kb on - strand, within IAI47_20935at 435.783 kb on + strand, within IAI47_20935at 435.783 kb on + strand, within IAI47_20935at 435.783 kb on + strand, within IAI47_20935at 435.784 kb on - strand, within IAI47_20935at 435.784 kb on - strand, within IAI47_20935at 435.784 kb on - strand, within IAI47_20935at 435.857 kb on + strand, within IAI47_20935at 435.857 kb on + strand, within IAI47_20935at 435.857 kb on + strand, within IAI47_20935at 435.857 kb on + strand, within IAI47_20935at 435.858 kb on - strand, within IAI47_20935at 435.858 kb on - strand, within IAI47_20935at 435.858 kb on - strand, within IAI47_20935at 435.858 kb on - strand, within IAI47_20935at 435.972 kb on + strandat 435.972 kb on + strandat 435.973 kb on - strandat 435.973 kb on - strandat 435.973 kb on - strandat 436.043 kb on + strandat 436.043 kb on + strandat 436.044 kb on - strandat 436.044 kb on - strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.081 kb on + strandat 436.082 kb on - strandat 436.089 kb on - strandat 436.089 kb on - strandat 436.089 kb on - strandat 436.166 kb on + strandat 436.166 kb on + strandat 436.167 kb on - strandat 436.167 kb on - strandat 436.167 kb on - strandat 436.187 kb on + strandat 436.187 kb on + strandat 436.188 kb on - strandat 436.188 kb on - strandat 436.204 kb on - strandat 436.204 kb on - strandat 436.204 kb on - strandat 436.230 kb on + strandat 436.230 kb on + strandat 436.230 kb on + strandat 436.312 kb on - strand, within IAI47_20940at 436.312 kb on - strand, within IAI47_20940at 436.389 kb on + strand, within IAI47_20940at 436.389 kb on + strand, within IAI47_20940at 436.389 kb on + strand, within IAI47_20940at 436.389 kb on + strand, within IAI47_20940at 436.390 kb on - strand, within IAI47_20940at 436.391 kb on + strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.392 kb on - strand, within IAI47_20940at 436.425 kb on + strand, within IAI47_20940at 436.425 kb on + strand, within IAI47_20940at 436.425 kb on + strand, within IAI47_20940at 436.426 kb on - strand, within IAI47_20940at 436.525 kb on + strand, within IAI47_20940at 436.525 kb on + strand, within IAI47_20940at 436.525 kb on + strand, within IAI47_20940at 436.525 kb on + strand, within IAI47_20940at 436.525 kb on + strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.526 kb on - strand, within IAI47_20940at 436.529 kb on + strand, within IAI47_20940at 436.529 kb on + strand, within IAI47_20940at 436.529 kb on + strand, within IAI47_20940at 436.530 kb on - strand, within IAI47_20940at 436.530 kb on - strand, within IAI47_20940at 436.530 kb on - strand, within IAI47_20940at 436.530 kb on - strand, within IAI47_20940at 436.530 kb on - strand, within IAI47_20940at 436.690 kb on + strandat 436.691 kb on - strandat 436.716 kb on + strandat 436.716 kb on + strandat 436.716 kb on + strandat 436.716 kb on + strandat 436.717 kb on - strandat 436.717 kb on - strandat 436.723 kb on + strandat 436.724 kb on - strandat 436.736 kb on - strandat 436.760 kb on + strandat 436.761 kb on - strandat 436.761 kb on - strandat 436.767 kb on + strandat 436.767 kb on + strandat 436.816 kb on + strandat 436.816 kb on + strandat 436.816 kb on + strandat 436.831 kb on + strandat 436.832 kb on - strandat 436.835 kb on + strandat 436.835 kb on + strandat 436.836 kb on - strandat 436.836 kb on - strandat 436.836 kb on - strandat 436.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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433,949 + IAI47_20930 0.47 -0.8
433,949 + IAI47_20930 0.47 -0.4
433,949 + IAI47_20930 0.47 -0.5
433,949 + IAI47_20930 0.47 -1.6
433,949 + IAI47_20930 0.47 -2.0
433,950 - IAI47_20930 0.47 -0.2
433,950 - IAI47_20930 0.47 -2.9
433,950 - IAI47_20930 0.47 -1.9
433,950 - IAI47_20930 0.47 +2.8
433,990 - IAI47_20930 0.51 -1.8
433,990 - IAI47_20930 0.51 -0.9
434,033 + IAI47_20930 0.54 -0.6
434,033 + IAI47_20930 0.54 +0.1
434,033 + IAI47_20930 0.54 +2.9
434,033 + IAI47_20930 0.54 +0.2
434,033 + IAI47_20930 0.54 -2.5
434,033 + IAI47_20930 0.54 +0.6
434,033 + IAI47_20930 0.54 -3.1
434,033 + IAI47_20930 0.54 -4.6
434,034 - IAI47_20930 0.54 +3.8
434,034 - IAI47_20930 0.54 +1.4
434,034 - IAI47_20930 0.54 -0.7
434,034 - IAI47_20930 0.54 +0.8
434,034 - IAI47_20930 0.54 +0.6
434,034 - IAI47_20930 0.54 -0.4
434,034 - IAI47_20930 0.54 -1.6
434,034 - IAI47_20930 0.54 +0.7
434,066 + IAI47_20930 0.57 -1.7
434,066 + IAI47_20930 0.57 +0.6
434,069 + IAI47_20930 0.57 +0.2
434,069 + IAI47_20930 0.57 -0.6
434,069 + IAI47_20930 0.57 -0.6
434,069 + IAI47_20930 0.57 -0.9
434,099 + IAI47_20930 0.60 +1.2
434,138 + IAI47_20930 0.63 +1.7
434,183 + IAI47_20930 0.66 -2.9
434,222 + IAI47_20930 0.70 +1.0
434,222 + IAI47_20930 0.70 -1.5
434,222 + IAI47_20930 0.70 -0.3
434,223 - IAI47_20930 0.70 +2.1
434,223 - IAI47_20930 0.70 -1.1
434,223 - IAI47_20930 0.70 -1.1
434,223 - IAI47_20930 0.70 -1.1
434,223 - IAI47_20930 0.70 +0.5
434,223 - IAI47_20930 0.70 -0.2
434,223 - IAI47_20930 0.70 +0.6
434,223 - IAI47_20930 0.70 +1.2
434,223 - IAI47_20930 0.70 +1.5
434,242 - IAI47_20930 0.71 -0.2
434,267 + IAI47_20930 0.73 +0.4
434,267 + IAI47_20930 0.73 -0.6
434,268 - IAI47_20930 0.73 +1.8
434,496 + +1.1
434,497 - +0.2
434,497 - +0.5
434,497 - +0.8
434,497 - -1.6
434,514 + +3.2
434,514 + -1.9
434,514 + +2.1
434,515 - -2.0
434,515 - +3.5
434,515 - +2.9
434,515 - +0.0
434,544 + -2.4
434,544 + +0.1
434,544 + +0.1
434,544 + +0.6
434,571 + +1.3
434,571 + +2.0
434,777 - -0.2
434,777 - +2.2
434,797 + -0.3
434,797 + +2.2
434,797 + -0.4
434,797 + +1.8
434,797 + +0.0
434,797 + -0.0
434,797 + -0.7
434,823 - +1.1
434,823 - +0.1
434,873 - +1.2
434,915 - -1.2
434,915 - -1.6
434,915 - -0.5
434,915 - -0.3
434,915 - -1.6
434,915 - +0.2
434,926 + +1.0
434,927 - +1.2
434,992 + +1.7
434,992 + -1.2
435,040 + IAI47_20935 0.11 +0.6
435,203 - IAI47_20935 0.25 -1.2
435,223 - IAI47_20935 0.27 +0.6
435,305 - IAI47_20935 0.35 -0.4
435,310 + IAI47_20935 0.35 -1.5
435,311 - IAI47_20935 0.35 +0.5
435,367 + IAI47_20935 0.40 -0.9
435,382 + IAI47_20935 0.41 +0.8
435,382 + IAI47_20935 0.41 -1.8
435,383 - IAI47_20935 0.42 -0.2
435,383 - IAI47_20935 0.42 -2.6
435,430 + IAI47_20935 0.46 +1.1
435,448 + IAI47_20935 0.47 -3.2
435,448 + IAI47_20935 0.47 +2.4
435,448 + IAI47_20935 0.47 -0.5
435,448 + IAI47_20935 0.47 -1.6
435,448 + IAI47_20935 0.47 -0.1
435,449 - IAI47_20935 0.47 +0.6
435,449 - IAI47_20935 0.47 -0.2
435,449 - IAI47_20935 0.47 +0.7
435,482 + IAI47_20935 0.50 +1.2
435,482 + IAI47_20935 0.50 +0.3
435,482 + IAI47_20935 0.50 -2.4
435,482 + IAI47_20935 0.50 -3.0
435,482 + IAI47_20935 0.50 +0.7
435,482 + IAI47_20935 0.50 +1.0
435,483 - IAI47_20935 0.50 +0.2
435,483 - IAI47_20935 0.50 -0.6
435,483 - IAI47_20935 0.50 +1.5
435,542 + IAI47_20935 0.56 -1.2
435,543 - IAI47_20935 0.56 +1.2
435,581 + IAI47_20935 0.59 -1.2
435,582 - IAI47_20935 0.59 +0.3
435,582 - IAI47_20935 0.59 +1.2
435,584 + IAI47_20935 0.60 +0.2
435,584 + IAI47_20935 0.60 -1.4
435,585 - IAI47_20935 0.60 +0.0
435,628 + IAI47_20935 0.63 +1.2
435,628 + IAI47_20935 0.63 -1.3
435,628 + IAI47_20935 0.63 +0.8
435,628 + IAI47_20935 0.63 -1.0
435,628 + IAI47_20935 0.63 -1.2
435,629 - IAI47_20935 0.64 -2.9
435,691 - IAI47_20935 0.69 +0.4
435,691 - IAI47_20935 0.69 -1.8
435,783 + IAI47_20935 0.77 -0.3
435,783 + IAI47_20935 0.77 -3.2
435,783 + IAI47_20935 0.77 +0.2
435,784 - IAI47_20935 0.77 -2.2
435,784 - IAI47_20935 0.77 -1.2
435,784 - IAI47_20935 0.77 -0.2
435,857 + IAI47_20935 0.84 -1.8
435,857 + IAI47_20935 0.84 -1.9
435,857 + IAI47_20935 0.84 -0.7
435,857 + IAI47_20935 0.84 -0.2
435,858 - IAI47_20935 0.84 -1.1
435,858 - IAI47_20935 0.84 -1.8
435,858 - IAI47_20935 0.84 +0.3
435,858 - IAI47_20935 0.84 -0.8
435,972 + +1.2
435,972 + -1.6
435,973 - -1.6
435,973 - +0.4
435,973 - -1.0
436,043 + +1.2
436,043 + +0.2
436,044 - +1.2
436,044 - -1.5
436,081 + -2.6
436,081 + -1.4
436,081 + -1.9
436,082 - -3.4
436,089 - -0.3
436,089 - -0.2
436,089 - +0.6
436,166 + -1.3
436,166 + +0.9
436,167 - -0.3
436,167 - -0.4
436,167 - +0.5
436,187 + -1.4
436,187 + -2.8
436,188 - +2.1
436,188 - -4.0
436,204 - +0.2
436,204 - -2.0
436,204 - -2.1
436,230 + -0.6
436,230 + +0.9
436,230 + +1.2
436,312 - IAI47_20940 0.23 +2.2
436,312 - IAI47_20940 0.23 -2.7
436,389 + IAI47_20940 0.36 +2.2
436,389 + IAI47_20940 0.36 -2.2
436,389 + IAI47_20940 0.36 -1.1
436,389 + IAI47_20940 0.36 +0.9
436,390 - IAI47_20940 0.37 -0.6
436,391 + IAI47_20940 0.37 -1.5
436,392 - IAI47_20940 0.37 -0.6
436,392 - IAI47_20940 0.37 -0.8
436,392 - IAI47_20940 0.37 +0.0
436,392 - IAI47_20940 0.37 -0.2
436,392 - IAI47_20940 0.37 +0.4
436,392 - IAI47_20940 0.37 -1.9
436,425 + IAI47_20940 0.43 +1.4
436,425 + IAI47_20940 0.43 -1.1
436,425 + IAI47_20940 0.43 -0.6
436,426 - IAI47_20940 0.43 +1.1
436,525 + IAI47_20940 0.61 +1.2
436,525 + IAI47_20940 0.61 +1.4
436,525 + IAI47_20940 0.61 +0.0
436,525 + IAI47_20940 0.61 +2.0
436,525 + IAI47_20940 0.61 +1.6
436,526 - IAI47_20940 0.61 +1.8
436,526 - IAI47_20940 0.61 -1.4
436,526 - IAI47_20940 0.61 +1.4
436,526 - IAI47_20940 0.61 +0.0
436,526 - IAI47_20940 0.61 -2.8
436,526 - IAI47_20940 0.61 -0.8
436,526 - IAI47_20940 0.61 -0.9
436,526 - IAI47_20940 0.61 +1.2
436,529 + IAI47_20940 0.61 +0.4
436,529 + IAI47_20940 0.61 +0.1
436,529 + IAI47_20940 0.61 -1.0
436,530 - IAI47_20940 0.62 +0.2
436,530 - IAI47_20940 0.62 +2.0
436,530 - IAI47_20940 0.62 -0.1
436,530 - IAI47_20940 0.62 +2.0
436,530 - IAI47_20940 0.62 -1.9
436,690 + +1.4
436,691 - +0.9
436,716 + +0.6
436,716 + +0.4
436,716 + +1.0
436,716 + -0.4
436,717 - -0.7
436,717 - -0.2
436,723 + +1.2
436,724 - +3.3
436,736 - -0.3
436,760 + -3.4
436,761 - -0.5
436,761 - -0.4
436,767 + +0.2
436,767 + -0.1
436,816 + +1.8
436,816 + -1.4
436,816 + -0.2
436,831 + +0.5
436,832 - +0.8
436,835 + -1.6
436,835 + -0.8
436,836 - +0.7
436,836 - +0.2
436,836 - +1.6
436,836 - +1.0

Or see this region's nucleotide sequence