Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19565 and IAI47_19570 are separated by 17 nucleotides
IAI47_19565: IAI47_19565 - phenolic acid decarboxylase, at 142,244 to 142,768
_19565
IAI47_19570: IAI47_19570 - H(+)/Cl(-) exchange transporter ClcA, at 142,786 to 144,177
_19570
Position (kb) 142
143 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 141.283 kb on - strand at 141.286 kb on + strand at 141.308 kb on + strand at 141.308 kb on + strand at 141.308 kb on + strand at 141.309 kb on - strand at 141.309 kb on - strand at 141.310 kb on + strand at 141.310 kb on + strand at 141.310 kb on + strand at 141.310 kb on + strand at 141.310 kb on + strand at 141.311 kb on - strand at 141.311 kb on - strand at 141.323 kb on - strand at 141.325 kb on + strand at 141.347 kb on + strand at 141.392 kb on + strand at 141.392 kb on + strand at 141.392 kb on + strand at 141.413 kb on + strand at 141.492 kb on + strand at 141.496 kb on + strand at 141.496 kb on + strand at 141.502 kb on + strand at 141.526 kb on + strand at 141.533 kb on + strand at 141.543 kb on + strand at 141.543 kb on + strand at 141.543 kb on + strand at 141.543 kb on + strand at 141.546 kb on + strand at 141.546 kb on + strand at 141.550 kb on + strand at 141.550 kb on + strand at 141.560 kb on + strand at 141.588 kb on + strand at 141.601 kb on + strand at 141.601 kb on + strand at 141.616 kb on + strand at 141.616 kb on + strand at 141.667 kb on + strand at 141.667 kb on + strand at 141.669 kb on + strand at 141.669 kb on + strand at 141.671 kb on + strand at 141.671 kb on + strand at 141.695 kb on + strand at 141.695 kb on + strand at 141.731 kb on + strand at 141.757 kb on + strand at 141.783 kb on + strand at 141.783 kb on + strand at 141.809 kb on + strand at 141.809 kb on + strand at 141.827 kb on - strand at 141.870 kb on + strand at 141.875 kb on + strand at 141.913 kb on + strand at 141.913 kb on + strand at 141.913 kb on + strand at 141.941 kb on + strand at 141.954 kb on + strand at 141.954 kb on + strand at 141.954 kb on + strand at 141.955 kb on - strand at 141.955 kb on - strand at 141.955 kb on - strand at 141.971 kb on + strand at 141.971 kb on + strand at 141.972 kb on - strand at 141.998 kb on - strand at 142.011 kb on + strand at 142.011 kb on + strand at 142.011 kb on + strand at 142.012 kb on - strand at 142.012 kb on - strand at 142.070 kb on + strand at 142.108 kb on - strand at 142.116 kb on + strand at 142.130 kb on + strand at 142.130 kb on + strand at 142.131 kb on - strand at 142.161 kb on + strand at 142.175 kb on + strand at 142.175 kb on + strand at 142.176 kb on - strand at 142.241 kb on - strand at 142.241 kb on - strand at 142.310 kb on + strand, within IAI47_19565 at 142.310 kb on + strand, within IAI47_19565 at 142.311 kb on - strand, within IAI47_19565 at 142.312 kb on + strand, within IAI47_19565 at 142.312 kb on + strand, within IAI47_19565 at 142.312 kb on + strand, within IAI47_19565 at 142.312 kb on + strand, within IAI47_19565 at 142.313 kb on - strand, within IAI47_19565 at 142.313 kb on - strand, within IAI47_19565 at 142.313 kb on - strand, within IAI47_19565 at 142.313 kb on - strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.316 kb on + strand, within IAI47_19565 at 142.317 kb on - strand, within IAI47_19565 at 142.335 kb on - strand, within IAI47_19565 at 142.343 kb on + strand, within IAI47_19565 at 142.343 kb on + strand, within IAI47_19565 at 142.343 kb on + strand, within IAI47_19565 at 142.344 kb on - strand, within IAI47_19565 at 142.344 kb on - strand, within IAI47_19565 at 142.344 kb on - strand, within IAI47_19565 at 142.360 kb on + strand, within IAI47_19565 at 142.361 kb on - strand, within IAI47_19565 at 142.370 kb on + strand, within IAI47_19565 at 142.391 kb on + strand, within IAI47_19565 at 142.392 kb on + strand, within IAI47_19565 at 142.451 kb on + strand, within IAI47_19565 at 142.451 kb on + strand, within IAI47_19565 at 142.451 kb on + strand, within IAI47_19565 at 142.475 kb on - strand, within IAI47_19565 at 142.475 kb on - strand, within IAI47_19565 at 142.589 kb on + strand, within IAI47_19565 at 142.589 kb on + strand, within IAI47_19565 at 142.590 kb on - strand, within IAI47_19565 at 142.603 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.612 kb on + strand, within IAI47_19565 at 142.613 kb on - strand, within IAI47_19565 at 142.613 kb on - strand, within IAI47_19565 at 142.613 kb on - strand, within IAI47_19565 at 142.649 kb on + strand, within IAI47_19565 at 142.650 kb on - strand, within IAI47_19565 at 142.650 kb on - strand, within IAI47_19565 at 142.650 kb on - strand, within IAI47_19565 at 142.650 kb on - strand, within IAI47_19565 at 142.657 kb on + strand, within IAI47_19565 at 142.658 kb on - strand, within IAI47_19565 at 142.658 kb on - strand, within IAI47_19565 at 142.658 kb on - strand, within IAI47_19565 at 142.658 kb on - strand, within IAI47_19565 at 142.658 kb on - strand, within IAI47_19565 at 142.682 kb on + strand, within IAI47_19565 at 142.682 kb on + strand, within IAI47_19565 at 142.682 kb on + strand, within IAI47_19565 at 142.682 kb on + strand, within IAI47_19565 at 142.683 kb on - strand, within IAI47_19565 at 142.683 kb on - strand, within IAI47_19565 at 142.683 kb on - strand, within IAI47_19565 at 142.711 kb on + strand, within IAI47_19565 at 142.711 kb on + strand, within IAI47_19565 at 142.712 kb on - strand, within IAI47_19565 at 142.716 kb on + strand at 142.716 kb on + strand at 142.717 kb on - strand at 142.762 kb on + strand at 142.762 kb on + strand at 142.762 kb on + strand at 142.763 kb on - strand at 142.763 kb on - strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.767 kb on - strand at 142.767 kb on - strand at 142.767 kb on - strand at 142.767 kb on - strand at 142.770 kb on + strand at 142.770 kb on + strand at 142.771 kb on - strand at 142.771 kb on - strand at 142.836 kb on + strand at 142.836 kb on + strand at 142.837 kb on - strand at 142.837 kb on - strand at 142.837 kb on - strand at 142.844 kb on + strand at 142.844 kb on + strand at 142.845 kb on - strand at 142.845 kb on - strand at 142.896 kb on + strand at 142.896 kb on + strand at 142.896 kb on + strand at 142.897 kb on - strand at 142.897 kb on - strand at 142.897 kb on - strand at 142.912 kb on + strand at 142.912 kb on + strand at 142.913 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.923 kb on - strand at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.926 kb on + strand, within IAI47_19570 at 142.927 kb on - strand, within IAI47_19570 at 142.927 kb on - strand, within IAI47_19570 at 142.927 kb on - strand, within IAI47_19570 at 142.972 kb on + strand, within IAI47_19570 at 143.033 kb on + strand, within IAI47_19570 at 143.033 kb on + strand, within IAI47_19570 at 143.034 kb on - strand, within IAI47_19570 at 143.080 kb on + strand, within IAI47_19570 at 143.080 kb on + strand, within IAI47_19570 at 143.081 kb on - strand, within IAI47_19570 at 143.081 kb on - strand, within IAI47_19570 at 143.081 kb on - strand, within IAI47_19570 at 143.089 kb on + strand, within IAI47_19570 at 143.113 kb on - strand, within IAI47_19570 at 143.172 kb on + strand, within IAI47_19570 at 143.173 kb on - strand, within IAI47_19570 at 143.173 kb on - strand, within IAI47_19570 at 143.303 kb on - strand, within IAI47_19570 at 143.320 kb on - strand, within IAI47_19570 at 143.360 kb on - strand, within IAI47_19570 at 143.360 kb on - strand, within IAI47_19570 at 143.370 kb on + strand, within IAI47_19570 at 143.371 kb on - strand, within IAI47_19570 at 143.371 kb on - strand, within IAI47_19570 at 143.374 kb on + strand, within IAI47_19570 at 143.374 kb on + strand, within IAI47_19570 at 143.374 kb on + strand, within IAI47_19570 at 143.375 kb on - strand, within IAI47_19570 at 143.388 kb on + strand, within IAI47_19570 at 143.407 kb on + strand, within IAI47_19570 at 143.408 kb on - strand, within IAI47_19570 at 143.408 kb on - strand, within IAI47_19570 at 143.408 kb on - strand, within IAI47_19570 at 143.414 kb on + strand, within IAI47_19570 at 143.414 kb on + strand, within IAI47_19570 at 143.415 kb on - strand, within IAI47_19570 at 143.486 kb on + strand, within IAI47_19570 at 143.521 kb on - strand, within IAI47_19570 at 143.550 kb on - strand, within IAI47_19570 at 143.580 kb on + strand, within IAI47_19570 at 143.581 kb on - strand, within IAI47_19570 at 143.652 kb on + strand, within IAI47_19570 at 143.652 kb on + strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.653 kb on - strand, within IAI47_19570 at 143.667 kb on + strand, within IAI47_19570 at 143.685 kb on + strand, within IAI47_19570 at 143.686 kb on - strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.704 kb on + strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.705 kb on - strand, within IAI47_19570 at 143.723 kb on - strand, within IAI47_19570 at 143.723 kb on - strand, within IAI47_19570 at 143.723 kb on - strand, within IAI47_19570
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 141,283 - -0.6 141,286 + -1.1 141,308 + -0.3 141,308 + -0.7 141,308 + -1.6 141,309 - +0.6 141,309 - +0.9 141,310 + -0.4 141,310 + +0.8 141,310 + -1.0 141,310 + -0.4 141,310 + +2.5 141,311 - -1.8 141,311 - +1.0 141,323 - +2.4 141,325 + +1.2 141,347 + +0.1 141,392 + +2.7 141,392 + -0.1 141,392 + -1.5 141,413 + -0.6 141,492 + -2.1 141,496 + +5.3 141,496 + +1.3 141,502 + -1.5 141,526 + +0.6 141,533 + -0.1 141,543 + +0.3 141,543 + +0.9 141,543 + +1.4 141,543 + -1.4 141,546 + -1.6 141,546 + -0.4 141,550 + +0.2 141,550 + +1.5 141,560 + -0.6 141,588 + +1.4 141,601 + -1.3 141,601 + +0.6 141,616 + -0.8 141,616 + -0.3 141,667 + +1.5 141,667 + +0.4 141,669 + +2.1 141,669 + +5.0 141,671 + +0.2 141,671 + -1.3 141,695 + -0.5 141,695 + +0.3 141,731 + -0.6 141,757 + -0.6 141,783 + -0.1 141,783 + +0.0 141,809 + -2.5 141,809 + -0.6 141,827 - -1.4 141,870 + +0.2 141,875 + +2.1 141,913 + -2.1 141,913 + -0.5 141,913 + -1.4 141,941 + -0.7 141,954 + +0.9 141,954 + +0.9 141,954 + +0.8 141,955 - +1.5 141,955 - -0.1 141,955 - +0.6 141,971 + -1.3 141,971 + -2.9 141,972 - -1.6 141,998 - -0.9 142,011 + -1.4 142,011 + -0.5 142,011 + +0.4 142,012 - -0.3 142,012 - +1.7 142,070 + -0.2 142,108 - +2.0 142,116 + +0.2 142,130 + -0.4 142,130 + -1.0 142,131 - -3.2 142,161 + +0.4 142,175 + -0.0 142,175 + -0.0 142,176 - +0.4 142,241 - -1.1 142,241 - +1.2 142,310 + IAI47_19565 0.13 -0.2 142,310 + IAI47_19565 0.13 +0.1 142,311 - IAI47_19565 0.13 -2.3 142,312 + IAI47_19565 0.13 +3.8 142,312 + IAI47_19565 0.13 -0.8 142,312 + IAI47_19565 0.13 +1.3 142,312 + IAI47_19565 0.13 +0.8 142,313 - IAI47_19565 0.13 -1.1 142,313 - IAI47_19565 0.13 +0.4 142,313 - IAI47_19565 0.13 +1.4 142,313 - IAI47_19565 0.13 -1.3 142,316 + IAI47_19565 0.14 +1.5 142,316 + IAI47_19565 0.14 +0.4 142,316 + IAI47_19565 0.14 +1.7 142,316 + IAI47_19565 0.14 +0.2 142,316 + IAI47_19565 0.14 +0.4 142,316 + IAI47_19565 0.14 -1.8 142,316 + IAI47_19565 0.14 +0.8 142,317 - IAI47_19565 0.14 -1.1 142,335 - IAI47_19565 0.17 -1.0 142,343 + IAI47_19565 0.19 -3.3 142,343 + IAI47_19565 0.19 -0.7 142,343 + IAI47_19565 0.19 +0.9 142,344 - IAI47_19565 0.19 -2.0 142,344 - IAI47_19565 0.19 -0.8 142,344 - IAI47_19565 0.19 +1.3 142,360 + IAI47_19565 0.22 +1.3 142,361 - IAI47_19565 0.22 +0.8 142,370 + IAI47_19565 0.24 +2.7 142,391 + IAI47_19565 0.28 -0.2 142,392 + IAI47_19565 0.28 +0.1 142,451 + IAI47_19565 0.39 -2.5 142,451 + IAI47_19565 0.39 -0.0 142,451 + IAI47_19565 0.39 +1.2 142,475 - IAI47_19565 0.44 +0.7 142,475 - IAI47_19565 0.44 +0.1 142,589 + IAI47_19565 0.66 -0.5 142,589 + IAI47_19565 0.66 +0.4 142,590 - IAI47_19565 0.66 -1.1 142,603 + IAI47_19565 0.68 +0.6 142,612 + IAI47_19565 0.70 +0.2 142,612 + IAI47_19565 0.70 +0.2 142,612 + IAI47_19565 0.70 +1.1 142,612 + IAI47_19565 0.70 -1.6 142,612 + IAI47_19565 0.70 -1.4 142,612 + IAI47_19565 0.70 +1.6 142,612 + IAI47_19565 0.70 -0.9 142,613 - IAI47_19565 0.70 +0.4 142,613 - IAI47_19565 0.70 -0.3 142,613 - IAI47_19565 0.70 +1.4 142,649 + IAI47_19565 0.77 +0.2 142,650 - IAI47_19565 0.77 +0.0 142,650 - IAI47_19565 0.77 -0.8 142,650 - IAI47_19565 0.77 -4.0 142,650 - IAI47_19565 0.77 +1.4 142,657 + IAI47_19565 0.79 +0.8 142,658 - IAI47_19565 0.79 -0.8 142,658 - IAI47_19565 0.79 +2.6 142,658 - IAI47_19565 0.79 +1.1 142,658 - IAI47_19565 0.79 -0.5 142,658 - IAI47_19565 0.79 +1.0 142,682 + IAI47_19565 0.83 +2.0 142,682 + IAI47_19565 0.83 +0.3 142,682 + IAI47_19565 0.83 -1.1 142,682 + IAI47_19565 0.83 +0.6 142,683 - IAI47_19565 0.84 +0.5 142,683 - IAI47_19565 0.84 -0.4 142,683 - IAI47_19565 0.84 +2.2 142,711 + IAI47_19565 0.89 -1.2 142,711 + IAI47_19565 0.89 -0.0 142,712 - IAI47_19565 0.89 +1.2 142,716 + +1.2 142,716 + +0.4 142,717 - +1.8 142,762 + -0.8 142,762 + -0.4 142,762 + -0.8 142,763 - +1.6 142,763 - -1.3 142,766 + +1.3 142,766 + +0.3 142,766 + -1.6 142,766 + +0.0 142,766 + +0.4 142,767 - +1.2 142,767 - -0.1 142,767 - +1.5 142,767 - -0.4 142,770 + +0.0 142,770 + -2.7 142,771 - -1.9 142,771 - +2.2 142,836 + -0.0 142,836 + -0.8 142,837 - +0.0 142,837 - +0.4 142,837 - -0.2 142,844 + -1.1 142,844 + -1.4 142,845 - -1.4 142,845 - +0.6 142,896 + -0.7 142,896 + +1.1 142,896 + +1.8 142,897 - -0.5 142,897 - -0.7 142,897 - +0.7 142,912 + -0.6 142,912 + +1.2 142,913 - -0.0 142,923 - -0.4 142,923 - +2.8 142,923 - -2.3 142,923 - +0.0 142,923 - +1.6 142,923 - -0.4 142,923 - +1.0 142,926 + IAI47_19570 0.10 +2.2 142,926 + IAI47_19570 0.10 +2.1 142,926 + IAI47_19570 0.10 +0.2 142,926 + IAI47_19570 0.10 +0.9 142,926 + IAI47_19570 0.10 +1.6 142,926 + IAI47_19570 0.10 +2.2 142,926 + IAI47_19570 0.10 +0.2 142,927 - IAI47_19570 0.10 -0.7 142,927 - IAI47_19570 0.10 -0.8 142,927 - IAI47_19570 0.10 +0.2 142,972 + IAI47_19570 0.13 -0.0 143,033 + IAI47_19570 0.18 -2.0 143,033 + IAI47_19570 0.18 +1.0 143,034 - IAI47_19570 0.18 -1.4 143,080 + IAI47_19570 0.21 +1.0 143,080 + IAI47_19570 0.21 -0.2 143,081 - IAI47_19570 0.21 -1.1 143,081 - IAI47_19570 0.21 +1.0 143,081 - IAI47_19570 0.21 -2.1 143,089 + IAI47_19570 0.22 +2.4 143,113 - IAI47_19570 0.23 -1.0 143,172 + IAI47_19570 0.28 -0.1 143,173 - IAI47_19570 0.28 +0.4 143,173 - IAI47_19570 0.28 -0.3 143,303 - IAI47_19570 0.37 +3.4 143,320 - IAI47_19570 0.38 -1.1 143,360 - IAI47_19570 0.41 -0.2 143,360 - IAI47_19570 0.41 -0.1 143,370 + IAI47_19570 0.42 -0.5 143,371 - IAI47_19570 0.42 -0.5 143,371 - IAI47_19570 0.42 +1.2 143,374 + IAI47_19570 0.42 +2.7 143,374 + IAI47_19570 0.42 +1.2 143,374 + IAI47_19570 0.42 +0.1 143,375 - IAI47_19570 0.42 +1.1 143,388 + IAI47_19570 0.43 -1.4 143,407 + IAI47_19570 0.45 +0.2 143,408 - IAI47_19570 0.45 +2.5 143,408 - IAI47_19570 0.45 +2.1 143,408 - IAI47_19570 0.45 +2.2 143,414 + IAI47_19570 0.45 +0.9 143,414 + IAI47_19570 0.45 +0.6 143,415 - IAI47_19570 0.45 +0.9 143,486 + IAI47_19570 0.50 +1.2 143,521 - IAI47_19570 0.53 +2.5 143,550 - IAI47_19570 0.55 -1.6 143,580 + IAI47_19570 0.57 -0.5 143,581 - IAI47_19570 0.57 -0.4 143,652 + IAI47_19570 0.62 +0.6 143,652 + IAI47_19570 0.62 +0.2 143,653 - IAI47_19570 0.62 +0.4 143,653 - IAI47_19570 0.62 -1.6 143,653 - IAI47_19570 0.62 +1.0 143,653 - IAI47_19570 0.62 +0.6 143,653 - IAI47_19570 0.62 +0.2 143,653 - IAI47_19570 0.62 -1.0 143,667 + IAI47_19570 0.63 +1.6 143,685 + IAI47_19570 0.65 +0.8 143,686 - IAI47_19570 0.65 +4.0 143,704 + IAI47_19570 0.66 +1.4 143,704 + IAI47_19570 0.66 +1.6 143,704 + IAI47_19570 0.66 -1.2 143,704 + IAI47_19570 0.66 +1.6 143,704 + IAI47_19570 0.66 +0.8 143,704 + IAI47_19570 0.66 -1.6 143,704 + IAI47_19570 0.66 +0.5 143,705 - IAI47_19570 0.66 +0.3 143,705 - IAI47_19570 0.66 -0.7 143,705 - IAI47_19570 0.66 -0.4 143,705 - IAI47_19570 0.66 -0.4 143,705 - IAI47_19570 0.66 +1.2 143,705 - IAI47_19570 0.66 -2.1 143,705 - IAI47_19570 0.66 +1.4 143,705 - IAI47_19570 0.66 +0.6 143,705 - IAI47_19570 0.66 -3.3 143,723 - IAI47_19570 0.67 -1.6 143,723 - IAI47_19570 0.67 +0.2 143,723 - IAI47_19570 0.67 +1.2
Or see this region's nucleotide sequence