Strain Fitness in Pantoea sp. MT58 around IAI47_14120

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,982,524	-				-1.8
2,982,528	+				-1.8
2,982,528	+				+0.6
2,982,528	+				+0.2
2,982,528	+				-0.0
2,982,528	+				-1.6
2,982,528	+				+0.9
2,982,529	-				-0.1
2,982,529	-				+1.3
2,982,529	-				-0.2
2,982,529	-				+1.6
2,982,538	+				-0.1
2,982,551	-				+1.0
2,982,560	-				+2.6
2,982,591	+				+0.4
2,982,627	+				+0.7
2,982,627	+				-1.8
2,982,627	+				+0.4
2,982,627	+				+0.1
2,982,627	+				-0.8
2,982,628	-				+2.7
2,982,628	-				+0.7
2,982,628	-				-2.0
2,982,628	-				-1.3
2,982,628	-				-0.4
2,982,648	+				+0.7
2,982,649	-				+1.9
2,982,694	-				+0.4
2,982,771	+				-0.4
2,982,772	-				+0.3
2,982,909	+		IAI47_14115	0.29	+0.3
2,982,909	+		IAI47_14115	0.29	-0.8
2,983,008	+		IAI47_14115	0.45	+0.9
2,983,009	-		IAI47_14115	0.46	+2.1
2,983,009	-		IAI47_14115	0.46	+0.9
2,983,009	-		IAI47_14115	0.46	-1.1
2,983,012	+		IAI47_14115	0.46	+1.6
2,983,012	+		IAI47_14115	0.46	+1.0
2,983,012	+		IAI47_14115	0.46	+1.2
2,983,012	+		IAI47_14115	0.46	+1.3
2,983,013	-		IAI47_14115	0.46	+2.6
2,983,013	-		IAI47_14115	0.46	+1.0
2,983,013	-		IAI47_14115	0.46	-0.9
2,983,013	-		IAI47_14115	0.46	+1.2
2,983,014	-		IAI47_14115	0.46	-1.4
2,983,077	+		IAI47_14115	0.57	+0.6
2,983,078	-		IAI47_14115	0.57	-0.5
2,983,078	-		IAI47_14115	0.57	-0.1
2,983,078	-		IAI47_14115	0.57	-2.0
2,983,078	-		IAI47_14115	0.57	-3.0
2,983,152	-		IAI47_14115	0.70	+3.1
2,983,196	+		IAI47_14115	0.77	+0.0
2,983,196	+		IAI47_14115	0.77	+1.7
2,983,196	+		IAI47_14115	0.77	-0.9
2,983,196	+		IAI47_14115	0.77	-0.8
2,983,197	-		IAI47_14115	0.77	-2.1
2,983,197	-		IAI47_14115	0.77	-1.2
2,983,295	-				+2.1
2,983,332	-				-2.2
2,983,344	+				+1.3
2,983,344	+				+0.2
2,983,344	+				+0.0
2,983,344	+				-1.6
2,983,344	+				+0.8
2,983,345	-				-0.4
2,983,345	-				-0.2
2,983,345	-				+1.1
2,983,345	-				-1.0
2,983,345	-				-1.4
2,983,360	+				-1.0
2,983,360	+				-0.6
2,983,360	+				+0.6
2,983,360	+				-1.4
2,983,361	-				-0.9
2,983,361	-				+1.4
2,983,375	+				+0.2
2,983,376	-				+0.6
2,983,378	+				+1.2
2,983,378	+				+0.4
2,983,378	+				+0.7
2,983,378	+				-0.4
2,983,378	+				+1.7
2,983,379	-				-0.7
2,983,379	-				-0.3
2,983,379	-				+2.5
2,983,492	-				+0.2
2,983,492	-				-0.7
2,983,496	+				-2.4
2,983,496	+				-1.0
2,983,496	+				+1.3
2,983,497	-				+3.3
2,983,497	-				-1.9
2,983,497	-				-1.1
2,983,497	-				-0.0
2,983,497	-				-1.8
2,983,497	-				+1.6
2,983,497	-				-1.0
2,983,497	-				+1.6
2,983,497	-				-2.8
2,983,497	-				+0.1
2,983,561	+				+0.5
2,983,561	+				-0.6
2,983,561	+				+1.0
2,983,562	-				-1.8
2,983,562	-				+0.4
2,983,562	-				+1.4
2,983,562	-				+2.0
2,983,562	-				-0.8
2,983,562	-				+0.2
2,983,562	-				+2.0
2,983,562	-				-0.4
2,983,562	-				+0.3
2,983,564	+				-0.4
2,983,564	+				+2.1
2,983,565	-				-1.6
2,983,565	-				+1.7
2,983,565	-				-0.8
2,983,565	-				-1.1
2,983,588	+				+0.3
2,983,588	+				-0.4
2,983,588	+				+1.0
2,983,589	-				+0.2
2,983,589	-				+1.9
2,983,648	+		IAI47_14120	0.14	+1.6
2,983,648	+		IAI47_14120	0.14	-0.3
2,983,649	-		IAI47_14120	0.14	-1.8
2,983,649	-		IAI47_14120	0.14	-0.3
2,983,666	+		IAI47_14120	0.15	+1.6
2,983,781	+		IAI47_14120	0.25	+0.9
2,983,781	+		IAI47_14120	0.25	-1.4
2,983,782	-		IAI47_14120	0.25	-0.3
2,983,798	+		IAI47_14120	0.27	+0.6
2,983,799	-		IAI47_14120	0.27	+0.8
2,983,799	-		IAI47_14120	0.27	+0.3
2,983,804	+		IAI47_14120	0.27	+0.2
2,983,805	-		IAI47_14120	0.27	-2.1
2,983,805	-		IAI47_14120	0.27	-0.4
2,983,907	+		IAI47_14120	0.36	-0.1
2,983,907	+		IAI47_14120	0.36	-1.1
2,983,907	+		IAI47_14120	0.36	-0.3
2,983,907	+		IAI47_14120	0.36	-2.0
2,983,908	-		IAI47_14120	0.36	+0.1
2,983,908	-		IAI47_14120	0.36	-1.9
2,983,930	+		IAI47_14120	0.38	+0.7
2,983,930	+		IAI47_14120	0.38	-1.3
2,983,930	+		IAI47_14120	0.38	-0.8
2,983,991	-		IAI47_14120	0.43	+1.6
2,983,991	-		IAI47_14120	0.43	+2.1
2,984,123	+		IAI47_14120	0.54	-0.4
2,984,123	+		IAI47_14120	0.54	-1.9
2,984,123	+		IAI47_14120	0.54	-0.4
2,984,123	+		IAI47_14120	0.54	+1.0
2,984,123	+		IAI47_14120	0.54	-1.0
2,984,123	+		IAI47_14120	0.54	-0.9
2,984,123	+		IAI47_14120	0.54	-0.4
2,984,124	-		IAI47_14120	0.54	+2.5
2,984,124	-		IAI47_14120	0.54	-0.9
2,984,124	-		IAI47_14120	0.54	+1.0
2,984,124	-		IAI47_14120	0.54	+1.7
2,984,124	-		IAI47_14120	0.54	+0.3
2,984,124	-		IAI47_14120	0.54	-0.0
2,984,124	-		IAI47_14120	0.54	+0.2
2,984,124	-		IAI47_14120	0.54	-0.4
2,984,124	-		IAI47_14120	0.54	-1.4
2,984,137	+		IAI47_14120	0.55	+0.6
2,984,138	-		IAI47_14120	0.55	+0.1
2,984,138	-		IAI47_14120	0.55	-2.1
2,984,140	+		IAI47_14120	0.55	+0.2
2,984,140	+		IAI47_14120	0.55	+0.7
2,984,140	+		IAI47_14120	0.55	+3.1
2,984,140	+		IAI47_14120	0.55	+0.6
2,984,141	-		IAI47_14120	0.55	-0.0
2,984,141	-		IAI47_14120	0.55	-0.9
2,984,144	+		IAI47_14120	0.56	+0.5
2,984,144	+		IAI47_14120	0.56	-0.8
2,984,145	-		IAI47_14120	0.56	+2.2
2,984,145	-		IAI47_14120	0.56	-1.9
2,984,171	+		IAI47_14120	0.58	+0.5
2,984,179	-		IAI47_14120	0.58	-1.4
2,984,179	-		IAI47_14120	0.58	-2.4
2,984,189	-		IAI47_14120	0.59	-1.4
2,984,253	+		IAI47_14120	0.65	+1.1
2,984,253	+		IAI47_14120	0.65	-0.5
2,984,254	-		IAI47_14120	0.65	+0.8
2,984,254	-		IAI47_14120	0.65	+1.3
2,984,254	-		IAI47_14120	0.65	-1.6
2,984,254	-		IAI47_14120	0.65	+0.8
2,984,254	-		IAI47_14120	0.65	+2.0
2,984,254	-		IAI47_14120	0.65	-0.4
2,984,262	+		IAI47_14120	0.65	+0.2
2,984,263	-		IAI47_14120	0.65	-0.9
2,984,352	+		IAI47_14120	0.73	+1.1
2,984,352	+		IAI47_14120	0.73	-0.9
2,984,352	+		IAI47_14120	0.73	-0.0
2,984,352	+		IAI47_14120	0.73	+1.3
2,984,352	+		IAI47_14120	0.73	+1.0
2,984,352	+		IAI47_14120	0.73	+0.5
2,984,352	+		IAI47_14120	0.73	+0.4
2,984,353	-		IAI47_14120	0.73	-2.8
2,984,353	-		IAI47_14120	0.73	+1.4
2,984,353	-		IAI47_14120	0.73	+0.7
2,984,353	-		IAI47_14120	0.73	-1.3
2,984,362	+		IAI47_14120	0.74	+1.2
2,984,362	+		IAI47_14120	0.74	-0.0
2,984,362	+		IAI47_14120	0.74	+0.6
2,984,362	+		IAI47_14120	0.74	+0.1
2,984,363	-		IAI47_14120	0.74	+0.2
2,984,363	-		IAI47_14120	0.74	-0.7
2,984,363	-		IAI47_14120	0.74	+0.9
2,984,363	-		IAI47_14120	0.74	+0.5
2,984,363	-		IAI47_14120	0.74	+0.3
2,984,363	-		IAI47_14120	0.74	+1.7
2,984,408	+		IAI47_14120	0.78	+1.4
2,984,409	-		IAI47_14120	0.78	-0.7
2,984,409	-		IAI47_14120	0.78	-1.8
2,984,409	-		IAI47_14120	0.78	-0.4
2,984,419	+		IAI47_14120	0.79	-0.0
2,984,419	+		IAI47_14120	0.79	-1.1
2,984,419	+		IAI47_14120	0.79	+4.5
2,984,420	-		IAI47_14120	0.79	-0.4
2,984,467	+		IAI47_14120	0.83	-1.5
2,984,467	+		IAI47_14120	0.83	+0.4
2,984,468	-		IAI47_14120	0.83	-1.3
2,984,468	-		IAI47_14120	0.83	-1.8
2,984,468	-		IAI47_14120	0.83	+0.1
2,984,468	-		IAI47_14120	0.83	-1.9
2,984,495	+		IAI47_14120	0.85	-0.7
2,984,495	+		IAI47_14120	0.85	+0.6
2,984,495	+		IAI47_14120	0.85	+1.4
2,984,495	+		IAI47_14120	0.85	-0.3
2,984,495	+		IAI47_14120	0.85	+0.7
2,984,495	+		IAI47_14120	0.85	+1.3
2,984,495	+		IAI47_14120	0.85	-0.8
2,984,495	+		IAI47_14120	0.85	+0.9
2,984,495	+		IAI47_14120	0.85	+0.9
2,984,495	+		IAI47_14120	0.85	-1.1
2,984,496	-		IAI47_14120	0.85	+1.1
2,984,496	-		IAI47_14120	0.85	+0.8
2,984,496	-		IAI47_14120	0.85	-0.7
2,984,551	+		IAI47_14120	0.90	-1.8
2,984,551	+		IAI47_14120	0.90	-1.4
2,984,551	+		IAI47_14120	0.90	+0.9
2,984,552	-		IAI47_14120	0.90	+1.4
2,984,553	+		IAI47_14120	0.90	+0.1
2,984,553	+		IAI47_14120	0.90	+0.2
2,984,553	+		IAI47_14120	0.90	-0.2
2,984,553	+		IAI47_14120	0.90	+2.9
2,984,553	+		IAI47_14120	0.90	+2.2
2,984,553	+		IAI47_14120	0.90	+3.4
2,984,553	+		IAI47_14120	0.90	-0.2
2,984,553	+		IAI47_14120	0.90	-0.5
2,984,554	-		IAI47_14120	0.90	-0.8
2,984,554	-		IAI47_14120	0.90	+0.8
2,984,554	-		IAI47_14120	0.90	+0.4
2,984,554	-		IAI47_14120	0.90	+0.7
2,984,554	-		IAI47_14120	0.90	-1.6
2,984,554	-		IAI47_14120	0.90	-0.4
2,984,596	+				+0.5
2,984,597	-				-0.9
2,984,672	+				-0.4
2,984,672	+				-1.4
2,984,672	+				-0.9
2,984,672	+				-0.1
2,984,672	+				+0.5
2,984,750	+				+1.1
2,984,750	+				-1.7
2,984,751	-				+2.8
2,984,751	-				+1.2
2,984,751	-				-1.0
2,984,751	-				-0.1
2,984,919	+		IAI47_14125	0.87	+0.9
2,984,919	+		IAI47_14125	0.87	+2.1
2,984,919	+		IAI47_14125	0.87	+1.6
2,984,919	+		IAI47_14125	0.87	+1.1
2,984,919	+		IAI47_14125	0.87	+1.4
2,984,920	-		IAI47_14125	0.87	-0.6
2,984,920	-		IAI47_14125	0.87	-0.4
2,984,920	-		IAI47_14125	0.87	+1.7
2,984,920	-		IAI47_14125	0.87	+2.4
2,984,920	-		IAI47_14125	0.87	+1.8
2,984,924	+		IAI47_14125	0.89	+0.6
2,984,924	+		IAI47_14125	0.89	-1.0
2,984,924	+		IAI47_14125	0.89	+1.0
2,984,924	+		IAI47_14125	0.89	-0.4
2,984,925	-				-0.4
2,984,925	-				-0.0
2,984,946	-				+1.6
2,984,975	-				+1.6
2,985,008	-				-2.6
2,985,008	-				+2.3
2,985,020	+				+0.9
2,985,020	+				-1.3
2,985,020	+				-0.6
2,985,021	-				+1.1
2,985,021	-				-1.6
2,985,021	-				+0.2
2,985,021	-				-0.1
2,985,054	-				-1.0
2,985,070	-				-0.6
2,985,081	-				-2.0
2,985,081	-				+1.2
2,985,081	-				-1.0
2,985,112	+				+0.2
2,985,113	-				+1.0
2,985,241	-		IAI47_14130	0.15	+0.2
2,985,241	-		IAI47_14130	0.15	-0.1
2,985,248	-		IAI47_14130	0.16	-1.6
2,985,274	-		IAI47_14130	0.19	-0.4
2,985,283	+		IAI47_14130	0.20	+1.1
2,985,284	-		IAI47_14130	0.20	-0.8
2,985,284	-		IAI47_14130	0.20	-0.3
2,985,284	-		IAI47_14130	0.20	-0.3
2,985,284	-		IAI47_14130	0.20	+0.4
2,985,284	-		IAI47_14130	0.20	+0.2
2,985,382	+		IAI47_14130	0.34	+1.1
2,985,382	+		IAI47_14130	0.34	-0.5
2,985,383	-		IAI47_14130	0.34	-1.1
2,985,514	+		IAI47_14130	0.52	-1.3
2,985,514	+		IAI47_14130	0.52	+0.3
2,985,514	+		IAI47_14130	0.52	-1.1
2,985,515	-		IAI47_14130	0.52	+0.6
2,985,515	-		IAI47_14130	0.52	+1.9