Strain Fitness in Pantoea sp. MT58 around IAI47_10800

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,279,265	-				-0.0
2,279,265	-				-0.7
2,279,265	-				+0.6
2,279,329	-		IAI47_10795	0.13	+0.3
2,279,329	-		IAI47_10795	0.13	+0.7
2,279,412	+		IAI47_10795	0.21	+0.3
2,279,426	+		IAI47_10795	0.22	-1.2
2,279,463	+		IAI47_10795	0.26	-0.3
2,279,464	-		IAI47_10795	0.26	-0.2
2,279,465	+		IAI47_10795	0.26	-0.0
2,279,465	+		IAI47_10795	0.26	-0.4
2,279,514	+		IAI47_10795	0.31	-0.3
2,279,515	-		IAI47_10795	0.31	+0.6
2,279,609	+		IAI47_10795	0.40	+1.0
2,279,612	+		IAI47_10795	0.41	-0.3
2,279,694	+		IAI47_10795	0.49	-2.0
2,279,694	+		IAI47_10795	0.49	+3.3
2,279,694	+		IAI47_10795	0.49	-2.0
2,279,744	+		IAI47_10795	0.53	-0.4
2,279,744	+		IAI47_10795	0.53	+1.3
2,279,744	+		IAI47_10795	0.53	-2.2
2,279,819	+		IAI47_10795	0.61	-1.0
2,279,820	-		IAI47_10795	0.61	+1.3
2,279,820	-		IAI47_10795	0.61	-1.0
2,279,939	+		IAI47_10795	0.72	-1.2
2,279,940	-		IAI47_10795	0.73	+1.3
2,280,015	+		IAI47_10795	0.80	+0.1
2,280,016	-		IAI47_10795	0.80	-0.7
2,280,020	+		IAI47_10795	0.80	-0.8
2,280,020	+		IAI47_10795	0.80	-0.8
2,280,020	+		IAI47_10795	0.80	-0.1
2,280,021	-		IAI47_10795	0.80	+1.3
2,280,021	-		IAI47_10795	0.80	+0.9
2,280,021	-		IAI47_10795	0.80	-1.9
2,280,040	-		IAI47_10795	0.82	-0.0
2,280,074	+				+2.3
2,280,074	+		IAI47_10795	0.86	+0.1
2,280,085	+		IAI47_10795	0.87	+1.9
2,280,085	+		IAI47_10795	0.87	+0.6
2,280,104	+		IAI47_10795	0.88	+0.2
2,280,104	+		IAI47_10795	0.88	+0.3
2,280,128	+				+1.7
2,280,164	+				+0.3
2,280,164	+				-1.0
2,280,165	-				-1.0
2,280,211	-				+0.3
2,280,244	+				+1.1
2,280,267	+				-1.2
2,280,267	+				+0.8
2,280,267	+				-0.9
2,280,267	+				+0.5
2,280,268	-				-0.0
2,280,526	+		IAI47_10800	0.34	-1.7
2,280,526	+		IAI47_10800	0.34	-1.0
2,280,553	+		IAI47_10800	0.37	-1.5
2,280,553	+		IAI47_10800	0.37	+1.9
2,280,554	-		IAI47_10800	0.37	-1.5
2,280,554	-		IAI47_10800	0.37	-1.3
2,280,554	-		IAI47_10800	0.37	-1.0
2,280,699	-		IAI47_10800	0.53	-2.3
2,280,733	+		IAI47_10800	0.57	-3.5
2,280,744	+		IAI47_10800	0.58	-3.4
2,280,744	+		IAI47_10800	0.58	-0.3
2,280,744	+		IAI47_10800	0.58	-1.1
2,280,744	+		IAI47_10800	0.58	-1.2
2,280,745	-		IAI47_10800	0.58	+0.3
2,280,745	-		IAI47_10800	0.58	+0.6
2,280,745	-		IAI47_10800	0.58	+0.6
2,280,745	-		IAI47_10800	0.58	-0.1
2,280,745	-		IAI47_10800	0.58	-0.3
2,280,745	-		IAI47_10800	0.58	-0.3
2,280,745	-		IAI47_10800	0.58	+0.7
2,280,780	+		IAI47_10800	0.62	-0.9
2,280,818	-		IAI47_10800	0.66	-0.9
2,280,952	+		IAI47_10800	0.81	-0.3
2,280,953	+		IAI47_10800	0.81	-0.3
2,280,953	+		IAI47_10800	0.81	-1.5
2,280,954	-		IAI47_10800	0.81	+2.3
2,280,954	-		IAI47_10800	0.81	-1.1
2,281,020	+		IAI47_10800	0.89	-0.5
2,281,020	+		IAI47_10800	0.89	-0.6
2,281,020	+		IAI47_10800	0.89	-0.4
2,281,020	+		IAI47_10800	0.89	+0.5
2,281,020	+		IAI47_10800	0.89	-0.3
2,281,021	-		IAI47_10800	0.89	-2.0
2,281,046	+				-0.7
2,281,046	+				+0.2
2,281,047	-				-1.0
2,281,047	-				-0.7
2,281,047	-				-1.3
2,281,067	-				-1.4
2,281,067	-				-0.2
2,281,103	+				-3.5
2,281,103	+				-0.0
2,281,103	+				+0.5
2,281,103	+				-1.6
2,281,103	+				-0.8
2,281,103	+				+1.3
2,281,104	-				-0.2
2,281,104	-				+0.9
2,281,104	-				+0.1
2,281,104	-				-1.3
2,281,104	-				+0.6
2,281,104	-				-0.2
2,281,104	-				+0.6
2,281,104	-				-0.3
2,281,110	+				-1.0
2,281,110	+				-1.0
2,281,110	+				-3.3
2,281,111	-				-0.3
2,281,111	-				+0.3
2,281,111	-				-1.1
2,281,111	-				+0.4
2,281,111	-				-0.6
2,281,123	+				-2.0
2,281,123	+				-0.2
2,281,124	-				+2.6
2,281,124	-				+1.1
2,281,160	+				-0.9
2,281,160	+				+2.2
2,281,160	+				-3.4
2,281,161	-				-1.3
2,281,161	-				+0.3
2,281,192	+				-0.7
2,281,192	+				+0.3
2,281,192	+				-0.2
2,281,193	-				-2.2
2,281,193	-				+2.1
2,281,251	+				-0.4
2,281,251	+				-0.3
2,281,252	-				-0.6
2,281,252	-				+0.4
2,281,252	-				+1.4
2,281,252	-				+1.7
2,281,258	+				-0.6
2,281,258	+				-2.0
2,281,258	+				-0.3
2,281,258	+				-0.0
2,281,259	-				-1.5
2,281,259	-				-0.4
2,281,259	-				-1.0
2,281,259	-				-0.4
2,281,259	-				-0.3
2,281,299	+				+3.9
2,281,299	+				-1.5
2,281,299	+				-0.9
2,281,300	-				+0.3
2,281,300	-				+0.2
2,281,300	-				+0.2
2,281,300	-				+0.8
2,281,303	+				-2.2
2,281,303	+				-2.8
2,281,303	+				-1.5
2,281,303	+				-0.9
2,281,303	+				-0.7
2,281,303	+				-0.3
2,281,303	+				-1.0
2,281,303	+				+0.4
2,281,303	+				+0.3
2,281,303	+				-0.3
2,281,304	-				-0.5
2,281,304	-				-0.1
2,281,304	-				+1.0
2,281,304	-				-0.6
2,281,338	+				+0.2
2,281,338	+				+2.9
2,281,339	-				-0.7
2,281,368	+		IAI47_10805	0.11	+1.7
2,281,368	+		IAI47_10805	0.11	-1.3
2,281,369	-		IAI47_10805	0.11	+1.0
2,281,509	+		IAI47_10805	0.23	+0.1
2,281,509	+		IAI47_10805	0.23	+0.5
2,281,509	+		IAI47_10805	0.23	-1.0
2,281,509	+		IAI47_10805	0.23	-2.6
2,281,509	+		IAI47_10805	0.23	+0.6
2,281,509	+		IAI47_10805	0.23	-2.7
2,281,509	+		IAI47_10805	0.23	-0.3
2,281,509	+		IAI47_10805	0.23	-2.5
2,281,510	-		IAI47_10805	0.23	-3.7
2,281,510	-		IAI47_10805	0.23	+1.3
2,281,510	-		IAI47_10805	0.23	-0.9
2,281,510	-		IAI47_10805	0.23	-0.7
2,281,510	-		IAI47_10805	0.23	+0.3
2,281,513	+		IAI47_10805	0.23	+1.3
2,281,513	+		IAI47_10805	0.23	+0.7
2,281,513	+		IAI47_10805	0.23	+0.1
2,281,513	+		IAI47_10805	0.23	+2.6
2,281,513	+		IAI47_10805	0.23	+0.7
2,281,513	+		IAI47_10805	0.23	+0.1
2,281,513	+		IAI47_10805	0.23	-1.6
2,281,514	-		IAI47_10805	0.24	-0.3
2,281,514	-		IAI47_10805	0.24	-3.6
2,281,514	-		IAI47_10805	0.24	+1.8
2,281,514	-		IAI47_10805	0.24	+0.6
2,281,514	-		IAI47_10805	0.24	-1.3
2,281,514	-		IAI47_10805	0.24	-2.5
2,281,514	-		IAI47_10805	0.24	-1.2
2,281,514	-		IAI47_10805	0.24	+0.4
2,281,514	-		IAI47_10805	0.24	+0.9
2,281,514	-		IAI47_10805	0.24	+0.7
2,281,514	-		IAI47_10805	0.24	-0.6
2,281,570	-		IAI47_10805	0.28	+0.7
2,281,635	+		IAI47_10805	0.34	+1.1
2,281,635	+		IAI47_10805	0.34	-1.9
2,281,635	+		IAI47_10805	0.34	+2.7
2,281,635	+		IAI47_10805	0.34	-0.6
2,281,636	-		IAI47_10805	0.34	-3.4
2,281,636	-		IAI47_10805	0.34	+1.1
2,281,636	-		IAI47_10805	0.34	-1.3
2,281,636	-		IAI47_10805	0.34	+1.0
2,281,821	+		IAI47_10805	0.49	-0.2
2,281,822	-		IAI47_10805	0.49	+0.7
2,281,822	-		IAI47_10805	0.49	-0.8
2,281,822	-		IAI47_10805	0.49	+3.5
2,281,843	+		IAI47_10805	0.51	+0.4
2,281,844	-		IAI47_10805	0.51	+1.5
2,281,844	-		IAI47_10805	0.51	-0.3
2,281,846	-		IAI47_10805	0.51	+0.5
2,281,846	-		IAI47_10805	0.51	+0.7
2,281,864	+		IAI47_10805	0.53	-3.0
2,281,864	+		IAI47_10805	0.53	+0.6
2,281,960	+		IAI47_10805	0.61	-0.4
2,281,960	+		IAI47_10805	0.61	+0.4
2,281,960	+		IAI47_10805	0.61	-0.6
2,281,960	+		IAI47_10805	0.61	+2.0
2,281,960	+		IAI47_10805	0.61	+0.3
2,281,961	-		IAI47_10805	0.61	-0.4
2,281,961	-		IAI47_10805	0.61	-3.3
2,281,961	-		IAI47_10805	0.61	+1.0
2,281,961	-		IAI47_10805	0.61	-2.5
2,281,961	-		IAI47_10805	0.61	-0.9
2,281,961	-		IAI47_10805	0.61	-0.2
2,281,961	-		IAI47_10805	0.61	-0.6
2,281,961	-		IAI47_10805	0.61	+0.7
2,281,988	+		IAI47_10805	0.63	+1.3
2,281,988	+		IAI47_10805	0.63	+0.0
2,281,989	-		IAI47_10805	0.63	-0.7
2,281,989	-		IAI47_10805	0.63	-1.0
2,282,058	+		IAI47_10805	0.69	-2.2
2,282,058	+		IAI47_10805	0.69	+0.3
2,282,058	+		IAI47_10805	0.69	-0.7
2,282,059	-		IAI47_10805	0.69	+0.7
2,282,062	+		IAI47_10805	0.69	+4.8
2,282,062	+		IAI47_10805	0.69	+1.6
2,282,062	+		IAI47_10805	0.69	-0.1
2,282,062	+		IAI47_10805	0.69	-0.5
2,282,062	+		IAI47_10805	0.69	-1.0
2,282,063	-		IAI47_10805	0.69	-1.9
2,282,063	-		IAI47_10805	0.69	-0.2
2,282,063	-		IAI47_10805	0.69	+0.2
2,282,063	-		IAI47_10805	0.69	-0.0
2,282,063	-		IAI47_10805	0.69	+1.6