Strain Fitness in Pantoea sp. MT58 around IAI47_09480

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,001,077	+				-1.4
2,001,077	+				+1.5
2,001,077	+				-0.1
2,001,077	+				-1.3
2,001,077	+				-1.0
2,001,078	-				-0.1
2,001,134	+				+0.3
2,001,134	+				-0.7
2,001,135	-				+0.4
2,001,184	+				+0.3
2,001,184	+				-0.6
2,001,184	+				+0.1
2,001,185	-				-0.1
2,001,211	-				+0.3
2,001,211	-				+0.0
2,001,211	-				+0.5
2,001,235	+				-1.3
2,001,235	+				+1.5
2,001,236	-				+0.4
2,001,236	-				+0.0
2,001,236	-				-3.6
2,001,236	-				+0.3
2,001,321	+				+0.3
2,001,322	-				+1.7
2,001,355	+				+0.8
2,001,371	-				-3.0
2,001,436	-				+0.9
2,001,436	-				+1.8
2,001,436	-				+0.3
2,001,443	+				-0.0
2,001,443	+				+0.6
2,001,443	+				-1.0
2,001,444	-				-1.9
2,001,447	-				+2.3
2,001,447	-				+0.5
2,001,453	+				-0.7
2,001,478	+				-0.1
2,001,478	+				-1.7
2,001,479	-				+0.7
2,001,558	+				+0.7
2,001,582	+				-2.3
2,001,583	-				+1.5
2,001,595	-				-2.9
2,001,596	+				+0.4
2,001,628	+				-2.1
2,001,628	+				-1.1
2,001,629	-				-0.0
2,001,629	-				-1.9
2,001,629	-				-0.3
2,001,631	-				+1.3
2,001,676	+				+0.4
2,001,696	-				-1.3
2,001,719	+				+0.0
2,001,719	+				+0.3
2,001,719	+				-1.3
2,001,720	-				-1.5
2,001,720	-				-1.2
2,001,720	-				-0.4
2,001,720	-				+0.2
2,001,720	-				+1.6
2,001,724	-				-3.1
2,001,724	-				-0.7
2,001,735	+				+2.0
2,001,840	-				-0.4
2,001,901	-				-1.9
2,001,973	-				+2.3
2,001,989	+				-1.5
2,001,989	+				+0.7
2,001,990	-				+4.6
2,001,990	-				-0.4
2,001,990	-				-1.2
2,001,990	-				+0.9
2,002,004	+				-1.7
2,002,004	+				+0.3
2,002,005	-				+1.3
2,002,005	-				-0.3
2,002,005	-				+1.7
2,002,005	-				-1.3
2,002,005	-				-1.0
2,002,005	-				-1.1
2,002,062	-				+0.8
2,002,089	+				-0.9
2,002,089	+				+2.8
2,002,104	-		IAI47_09480	0.11	-0.2
2,002,188	+		IAI47_09480	0.44	-1.3
2,002,188	+		IAI47_09480	0.44	-0.5
2,002,188	+		IAI47_09480	0.44	-1.2
2,002,188	+		IAI47_09480	0.44	-1.3
2,002,188	+		IAI47_09480	0.44	+1.1
2,002,189	-		IAI47_09480	0.44	-0.6
2,002,278	-		IAI47_09480	0.79	-1.5
2,002,290	+		IAI47_09480	0.83	-3.1
2,002,291	-		IAI47_09480	0.84	+1.8
2,002,333	+				-0.2
2,002,333	+				-0.5
2,002,333	+				+2.3
2,002,333	+				-0.6
2,002,334	-				-0.2
2,002,334	-				+0.7
2,002,358	-				+2.4
2,002,362	+				-1.9
2,002,376	+				-0.5
2,002,376	+				+2.4
2,002,377	-				-0.1
2,002,384	+				-0.3
2,002,385	-				-0.3
2,002,385	-				+0.7
2,002,401	+				+0.5
2,002,408	-				+1.3
2,002,408	-				-0.7
2,002,408	-				+0.1
2,002,408	-				+2.0
2,002,496	+				-1.1
2,002,496	+				-0.1
2,002,496	+				+0.5
2,002,496	+				-0.3
2,002,496	+				-1.6
2,002,496	+				+0.2
2,002,496	+				+1.7
2,002,496	+				-2.4
2,002,496	+				-2.1
2,002,497	-				+1.0
2,002,497	-				+0.7
2,002,497	-				-1.0
2,002,497	-				+0.3
2,002,497	-				-0.7
2,002,497	-				+1.5
2,002,497	-				-3.1
2,002,497	-				+0.4
2,002,516	+				+0.8
2,002,516	+				-4.0
2,002,516	+				+0.2
2,002,517	-				-0.3
2,002,517	-				+0.5
2,002,543	+				+3.7
2,002,543	+				-0.3
2,002,544	-				-0.0
2,002,544	-				+0.8
2,002,591	+				+0.3
2,002,592	-				-1.1
2,002,626	+		IAI47_09485	0.13	-3.1
2,002,626	+		IAI47_09485	0.13	+2.0
2,002,626	+		IAI47_09485	0.13	+1.8
2,002,626	+		IAI47_09485	0.13	+0.7
2,002,626	+		IAI47_09485	0.13	+0.9
2,002,626	+		IAI47_09485	0.13	-1.2
2,002,627	-		IAI47_09485	0.13	+1.3
2,002,627	-		IAI47_09485	0.13	-0.6
2,002,627	-		IAI47_09485	0.13	+1.3
2,002,627	-		IAI47_09485	0.13	-0.3
2,002,632	+		IAI47_09485	0.14	+0.4
2,002,632	+		IAI47_09485	0.14	+2.8
2,002,633	-		IAI47_09485	0.14	-1.7
2,002,633	-		IAI47_09485	0.14	+1.7
2,002,633	-		IAI47_09485	0.14	-0.1
2,002,633	-		IAI47_09485	0.14	-1.9
2,002,633	-		IAI47_09485	0.14	-0.6
2,002,633	-		IAI47_09485	0.14	-0.7
2,002,670	+		IAI47_09485	0.19	-1.9
2,002,671	-		IAI47_09485	0.20	-2.3
2,002,671	-		IAI47_09485	0.20	+0.5
2,002,671	-		IAI47_09485	0.20	+1.2
2,002,691	-		IAI47_09485	0.23	+1.5
2,002,697	+		IAI47_09485	0.24	+1.4
2,002,697	+		IAI47_09485	0.24	-2.6
2,002,698	-		IAI47_09485	0.24	-3.7
2,002,740	-		IAI47_09485	0.30	+0.4
2,002,746	-		IAI47_09485	0.31	-1.0
2,002,759	-		IAI47_09485	0.33	-1.2
2,002,763	+		IAI47_09485	0.34	-1.0
2,002,763	+		IAI47_09485	0.34	+0.6
2,002,763	+		IAI47_09485	0.34	-0.2
2,002,763	+		IAI47_09485	0.34	-0.3
2,002,763	+		IAI47_09485	0.34	-0.7
2,002,764	-		IAI47_09485	0.34	+0.6
2,002,764	-		IAI47_09485	0.34	+1.7
2,002,764	-		IAI47_09485	0.34	-0.3
2,002,764	-		IAI47_09485	0.34	+1.0
2,002,764	-		IAI47_09485	0.34	-1.3
2,002,764	-		IAI47_09485	0.34	+0.5
2,002,764	-		IAI47_09485	0.34	+2.8
2,002,837	+		IAI47_09485	0.45	+0.6
2,002,837	+		IAI47_09485	0.45	-0.5
2,002,838	-		IAI47_09485	0.45	+0.0
2,002,838	-		IAI47_09485	0.45	+1.7
2,002,852	+		IAI47_09485	0.47	+2.9
2,002,852	+		IAI47_09485	0.47	+1.1
2,002,852	+		IAI47_09485	0.47	+0.9
2,002,852	+		IAI47_09485	0.47	-0.2
2,002,852	+		IAI47_09485	0.47	+0.3
2,002,853	-		IAI47_09485	0.47	+1.6
2,002,853	-		IAI47_09485	0.47	-0.1
2,002,853	-		IAI47_09485	0.47	-0.7
2,002,853	-		IAI47_09485	0.47	+0.3
2,002,853	-		IAI47_09485	0.47	+0.8
2,002,853	-		IAI47_09485	0.47	-0.1
2,002,897	-		IAI47_09485	0.54	+1.4
2,002,971	-		IAI47_09485	0.65	+1.4
2,002,995	-		IAI47_09485	0.69	-0.7
2,003,033	+		IAI47_09485	0.75	+0.3
2,003,047	+		IAI47_09485	0.77	+0.9
2,003,047	+		IAI47_09485	0.77	+1.3
2,003,048	-		IAI47_09485	0.77	+0.4
2,003,048	-		IAI47_09485	0.77	+1.8
2,003,048	-		IAI47_09485	0.77	+0.7
2,003,093	+		IAI47_09485	0.84	-1.5
2,003,093	+		IAI47_09485	0.84	+3.1
2,003,094	-		IAI47_09485	0.84	-1.0
2,003,094	-		IAI47_09485	0.84	+0.3
2,003,094	-		IAI47_09485	0.84	+0.8
2,003,159	+				+0.4
2,003,182	-				+0.6
2,003,182	-				+1.2
2,003,186	+				-0.0
2,003,187	-				+1.1
2,003,187	-				+0.5
2,003,187	-				-0.3
2,003,194	-				-2.6
2,003,204	+				-3.3
2,003,204	+				-0.7
2,003,214	+				+0.6
2,003,214	+				+1.5
2,003,215	-				-0.7
2,003,215	-				-1.1
2,003,217	+				-2.4
2,003,218	-				-0.1
2,003,218	-				-1.1
2,003,218	-				-3.5
2,003,255	+				-1.9
2,003,256	-				-1.3
2,003,256	-				+3.0
2,003,256	-				-1.1
2,003,256	-				-3.6
2,003,264	+				-0.1
2,003,265	-				+1.3