Strain Fitness in Pantoea sp. MT58 around IAI47_09230

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_09225 and IAI47_09230 are separated by 47 nucleotidesIAI47_09230 and IAI47_09235 are separated by 370 nucleotides IAI47_09225: IAI47_09225 - protease SohB, at 1,943,033 to 1,944,079 _09225 IAI47_09230: IAI47_09230 - YciN family protein, at 1,944,127 to 1,944,375 _09230 IAI47_09235: IAI47_09235 - type I DNA topoisomerase, at 1,944,746 to 1,947,370 _09235 Position (kb) 1944 1945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1943.183 kb on + strand, within IAI47_09225at 1943.183 kb on + strand, within IAI47_09225at 1943.184 kb on - strand, within IAI47_09225at 1943.184 kb on - strand, within IAI47_09225at 1943.184 kb on - strand, within IAI47_09225at 1943.184 kb on - strand, within IAI47_09225at 1943.184 kb on - strand, within IAI47_09225at 1943.339 kb on + strand, within IAI47_09225at 1943.339 kb on + strand, within IAI47_09225at 1943.340 kb on - strand, within IAI47_09225at 1943.340 kb on - strand, within IAI47_09225at 1943.340 kb on - strand, within IAI47_09225at 1943.340 kb on - strand, within IAI47_09225at 1943.354 kb on - strand, within IAI47_09225at 1943.354 kb on - strand, within IAI47_09225at 1943.409 kb on + strand, within IAI47_09225at 1943.409 kb on + strand, within IAI47_09225at 1943.409 kb on + strand, within IAI47_09225at 1943.418 kb on + strand, within IAI47_09225at 1943.472 kb on + strand, within IAI47_09225at 1943.472 kb on + strand, within IAI47_09225at 1943.472 kb on + strand, within IAI47_09225at 1943.472 kb on + strand, within IAI47_09225at 1943.472 kb on + strand, within IAI47_09225at 1943.473 kb on - strand, within IAI47_09225at 1943.473 kb on - strand, within IAI47_09225at 1943.530 kb on + strand, within IAI47_09225at 1943.531 kb on - strand, within IAI47_09225at 1943.531 kb on - strand, within IAI47_09225at 1943.533 kb on + strand, within IAI47_09225at 1943.533 kb on + strand, within IAI47_09225at 1943.534 kb on - strand, within IAI47_09225at 1943.548 kb on + strand, within IAI47_09225at 1943.571 kb on - strand, within IAI47_09225at 1943.571 kb on - strand, within IAI47_09225at 1943.571 kb on - strand, within IAI47_09225at 1943.571 kb on - strand, within IAI47_09225at 1943.586 kb on + strand, within IAI47_09225at 1943.586 kb on + strand, within IAI47_09225at 1943.587 kb on - strand, within IAI47_09225at 1943.587 kb on - strand, within IAI47_09225at 1943.653 kb on + strand, within IAI47_09225at 1943.653 kb on + strand, within IAI47_09225at 1943.677 kb on + strand, within IAI47_09225at 1943.677 kb on + strand, within IAI47_09225at 1943.677 kb on + strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.678 kb on - strand, within IAI47_09225at 1943.714 kb on + strand, within IAI47_09225at 1943.714 kb on + strand, within IAI47_09225at 1943.714 kb on + strand, within IAI47_09225at 1943.714 kb on + strand, within IAI47_09225at 1943.714 kb on + strand, within IAI47_09225at 1943.715 kb on - strand, within IAI47_09225at 1943.715 kb on - strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.716 kb on + strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.717 kb on - strand, within IAI47_09225at 1943.722 kb on + strand, within IAI47_09225at 1943.722 kb on + strand, within IAI47_09225at 1943.722 kb on + strand, within IAI47_09225at 1943.722 kb on + strand, within IAI47_09225at 1943.722 kb on + strand, within IAI47_09225at 1943.723 kb on - strand, within IAI47_09225at 1943.723 kb on - strand, within IAI47_09225at 1943.723 kb on - strand, within IAI47_09225at 1943.799 kb on + strand, within IAI47_09225at 1943.799 kb on + strand, within IAI47_09225at 1943.800 kb on - strand, within IAI47_09225at 1943.803 kb on + strand, within IAI47_09225at 1943.803 kb on + strand, within IAI47_09225at 1943.804 kb on - strand, within IAI47_09225at 1943.845 kb on + strand, within IAI47_09225at 1943.845 kb on + strand, within IAI47_09225at 1943.845 kb on + strand, within IAI47_09225at 1943.845 kb on + strand, within IAI47_09225at 1943.846 kb on - strand, within IAI47_09225at 1943.972 kb on + strand, within IAI47_09225at 1943.972 kb on + strand, within IAI47_09225at 1943.973 kb on - strand, within IAI47_09225at 1943.973 kb on - strand, within IAI47_09225at 1943.973 kb on - strand, within IAI47_09225at 1943.973 kb on - strand, within IAI47_09225at 1943.986 kb on + strandat 1944.005 kb on - strandat 1944.109 kb on - strandat 1944.129 kb on - strandat 1944.140 kb on + strandat 1944.180 kb on + strand, within IAI47_09230at 1944.250 kb on + strand, within IAI47_09230at 1944.250 kb on + strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.251 kb on - strand, within IAI47_09230at 1944.292 kb on + strand, within IAI47_09230at 1944.292 kb on + strand, within IAI47_09230at 1944.293 kb on - strand, within IAI47_09230at 1944.296 kb on + strand, within IAI47_09230at 1944.296 kb on + strand, within IAI47_09230at 1944.296 kb on + strand, within IAI47_09230at 1944.297 kb on - strand, within IAI47_09230at 1944.297 kb on - strand, within IAI47_09230at 1944.297 kb on - strand, within IAI47_09230at 1944.321 kb on + strand, within IAI47_09230at 1944.322 kb on - strand, within IAI47_09230at 1944.354 kb on + strandat 1944.354 kb on + strandat 1944.354 kb on + strandat 1944.355 kb on - strandat 1944.355 kb on - strandat 1944.377 kb on + strandat 1944.377 kb on + strandat 1944.377 kb on + strandat 1944.412 kb on + strandat 1944.412 kb on + strandat 1944.413 kb on - strandat 1944.413 kb on - strandat 1944.413 kb on - strandat 1944.415 kb on - strandat 1944.417 kb on + strandat 1944.417 kb on + strandat 1944.417 kb on + strandat 1944.418 kb on - strandat 1944.435 kb on + strandat 1944.436 kb on - strandat 1944.469 kb on + strandat 1944.469 kb on + strandat 1944.487 kb on + strandat 1944.487 kb on + strandat 1944.487 kb on + strandat 1944.488 kb on - strandat 1944.488 kb on - strandat 1944.488 kb on - strandat 1944.488 kb on - strandat 1944.488 kb on - strandat 1944.491 kb on + strandat 1944.491 kb on + strandat 1944.491 kb on + strandat 1944.491 kb on + strandat 1944.491 kb on + strandat 1944.491 kb on + strandat 1944.492 kb on - strandat 1944.517 kb on + strandat 1944.517 kb on + strandat 1944.517 kb on + strandat 1944.517 kb on + strandat 1944.518 kb on - strandat 1944.655 kb on + strandat 1944.671 kb on + strandat 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.702 kb on + strandat 1944.731 kb on + strandat 1944.735 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
remove
1,943,183 + IAI47_09225 0.14 +1.5
1,943,183 + IAI47_09225 0.14 -1.3
1,943,184 - IAI47_09225 0.14 -0.1
1,943,184 - IAI47_09225 0.14 -1.9
1,943,184 - IAI47_09225 0.14 -1.3
1,943,184 - IAI47_09225 0.14 -0.3
1,943,184 - IAI47_09225 0.14 -1.7
1,943,339 + IAI47_09225 0.29 -0.3
1,943,339 + IAI47_09225 0.29 +1.0
1,943,340 - IAI47_09225 0.29 +0.7
1,943,340 - IAI47_09225 0.29 -0.3
1,943,340 - IAI47_09225 0.29 -2.4
1,943,340 - IAI47_09225 0.29 +1.2
1,943,354 - IAI47_09225 0.31 -1.3
1,943,354 - IAI47_09225 0.31 +0.7
1,943,409 + IAI47_09225 0.36 -1.7
1,943,409 + IAI47_09225 0.36 +0.9
1,943,409 + IAI47_09225 0.36 -0.6
1,943,418 + IAI47_09225 0.37 +1.7
1,943,472 + IAI47_09225 0.42 +1.6
1,943,472 + IAI47_09225 0.42 -0.3
1,943,472 + IAI47_09225 0.42 +1.3
1,943,472 + IAI47_09225 0.42 +0.3
1,943,472 + IAI47_09225 0.42 +0.4
1,943,473 - IAI47_09225 0.42 -0.1
1,943,473 - IAI47_09225 0.42 +0.9
1,943,530 + IAI47_09225 0.47 +0.7
1,943,531 - IAI47_09225 0.48 -0.3
1,943,531 - IAI47_09225 0.48 -2.4
1,943,533 + IAI47_09225 0.48 -0.5
1,943,533 + IAI47_09225 0.48 +0.2
1,943,534 - IAI47_09225 0.48 -1.2
1,943,548 + IAI47_09225 0.49 -1.7
1,943,571 - IAI47_09225 0.51 -3.4
1,943,571 - IAI47_09225 0.51 +1.3
1,943,571 - IAI47_09225 0.51 -1.2
1,943,571 - IAI47_09225 0.51 -0.3
1,943,586 + IAI47_09225 0.53 +0.0
1,943,586 + IAI47_09225 0.53 +0.6
1,943,587 - IAI47_09225 0.53 +0.9
1,943,587 - IAI47_09225 0.53 +0.1
1,943,653 + IAI47_09225 0.59 +2.0
1,943,653 + IAI47_09225 0.59 +0.8
1,943,677 + IAI47_09225 0.62 -0.5
1,943,677 + IAI47_09225 0.62 +0.3
1,943,677 + IAI47_09225 0.62 +2.2
1,943,678 - IAI47_09225 0.62 +3.3
1,943,678 - IAI47_09225 0.62 -0.3
1,943,678 - IAI47_09225 0.62 -3.1
1,943,678 - IAI47_09225 0.62 +0.0
1,943,678 - IAI47_09225 0.62 +1.7
1,943,678 - IAI47_09225 0.62 -1.2
1,943,678 - IAI47_09225 0.62 +0.6
1,943,714 + IAI47_09225 0.65 -1.3
1,943,714 + IAI47_09225 0.65 -1.7
1,943,714 + IAI47_09225 0.65 -2.6
1,943,714 + IAI47_09225 0.65 -0.3
1,943,714 + IAI47_09225 0.65 +0.9
1,943,715 - IAI47_09225 0.65 +3.0
1,943,715 - IAI47_09225 0.65 +0.9
1,943,716 + IAI47_09225 0.65 +1.3
1,943,716 + IAI47_09225 0.65 +0.4
1,943,716 + IAI47_09225 0.65 +2.3
1,943,716 + IAI47_09225 0.65 +3.3
1,943,716 + IAI47_09225 0.65 +2.5
1,943,716 + IAI47_09225 0.65 -0.7
1,943,717 - IAI47_09225 0.65 +0.3
1,943,717 - IAI47_09225 0.65 +1.1
1,943,717 - IAI47_09225 0.65 +0.3
1,943,717 - IAI47_09225 0.65 -3.4
1,943,717 - IAI47_09225 0.65 +1.0
1,943,717 - IAI47_09225 0.65 -1.5
1,943,717 - IAI47_09225 0.65 -1.5
1,943,717 - IAI47_09225 0.65 +1.3
1,943,717 - IAI47_09225 0.65 -2.7
1,943,717 - IAI47_09225 0.65 +0.4
1,943,717 - IAI47_09225 0.65 -1.1
1,943,717 - IAI47_09225 0.65 -1.3
1,943,722 + IAI47_09225 0.66 +0.0
1,943,722 + IAI47_09225 0.66 +1.0
1,943,722 + IAI47_09225 0.66 -0.7
1,943,722 + IAI47_09225 0.66 -0.8
1,943,722 + IAI47_09225 0.66 -3.8
1,943,723 - IAI47_09225 0.66 +3.3
1,943,723 - IAI47_09225 0.66 -0.2
1,943,723 - IAI47_09225 0.66 +0.9
1,943,799 + IAI47_09225 0.73 -1.5
1,943,799 + IAI47_09225 0.73 +0.7
1,943,800 - IAI47_09225 0.73 -0.7
1,943,803 + IAI47_09225 0.74 +0.3
1,943,803 + IAI47_09225 0.74 +1.7
1,943,804 - IAI47_09225 0.74 -0.1
1,943,845 + IAI47_09225 0.78 -0.9
1,943,845 + IAI47_09225 0.78 -3.2
1,943,845 + IAI47_09225 0.78 -0.1
1,943,845 + IAI47_09225 0.78 -1.1
1,943,846 - IAI47_09225 0.78 +0.3
1,943,972 + IAI47_09225 0.90 +1.3
1,943,972 + IAI47_09225 0.90 +0.3
1,943,973 - IAI47_09225 0.90 -1.0
1,943,973 - IAI47_09225 0.90 +0.0
1,943,973 - IAI47_09225 0.90 +0.6
1,943,973 - IAI47_09225 0.90 -1.1
1,943,986 + +0.6
1,944,005 - +0.5
1,944,109 - +0.4
1,944,129 - -0.2
1,944,140 + -1.2
1,944,180 + IAI47_09230 0.21 -1.2
1,944,250 + IAI47_09230 0.49 -0.8
1,944,250 + IAI47_09230 0.49 -1.7
1,944,251 - IAI47_09230 0.50 +0.4
1,944,251 - IAI47_09230 0.50 -1.5
1,944,251 - IAI47_09230 0.50 -0.3
1,944,251 - IAI47_09230 0.50 +1.3
1,944,251 - IAI47_09230 0.50 +3.9
1,944,251 - IAI47_09230 0.50 +0.7
1,944,251 - IAI47_09230 0.50 -0.1
1,944,292 + IAI47_09230 0.66 -1.1
1,944,292 + IAI47_09230 0.66 -0.9
1,944,293 - IAI47_09230 0.67 -1.5
1,944,296 + IAI47_09230 0.68 -0.2
1,944,296 + IAI47_09230 0.68 -0.9
1,944,296 + IAI47_09230 0.68 +2.3
1,944,297 - IAI47_09230 0.68 -0.8
1,944,297 - IAI47_09230 0.68 -2.2
1,944,297 - IAI47_09230 0.68 -2.6
1,944,321 + IAI47_09230 0.78 +0.0
1,944,322 - IAI47_09230 0.78 +0.5
1,944,354 + +1.1
1,944,354 + +2.6
1,944,354 + +0.3
1,944,355 - +1.0
1,944,355 - -1.0
1,944,377 + +1.3
1,944,377 + +0.5
1,944,377 + +0.5
1,944,412 + +1.1
1,944,412 + -1.3
1,944,413 - -0.4
1,944,413 - -1.2
1,944,413 - -1.5
1,944,415 - -0.3
1,944,417 + -0.1
1,944,417 + +0.3
1,944,417 + -0.1
1,944,418 - +1.0
1,944,435 + -0.5
1,944,436 - -0.6
1,944,469 + +1.3
1,944,469 + -0.9
1,944,487 + -0.8
1,944,487 + +2.9
1,944,487 + -1.9
1,944,488 - -0.3
1,944,488 - -0.1
1,944,488 - -0.7
1,944,488 - +1.5
1,944,488 - +0.3
1,944,491 + -0.8
1,944,491 + +0.3
1,944,491 + +2.5
1,944,491 + -1.3
1,944,491 + +0.3
1,944,491 + +0.1
1,944,492 - +2.5
1,944,517 + +1.7
1,944,517 + +0.4
1,944,517 + +0.5
1,944,517 + +0.5
1,944,518 - +3.0
1,944,655 + -0.7
1,944,671 + -0.1
1,944,702 + -2.6
1,944,702 + -1.8
1,944,702 + -1.4
1,944,702 + -2.1
1,944,702 + -2.1
1,944,731 + -0.7
1,944,735 + -1.7

Or see this region's nucleotide sequence