Strain Fitness in Pantoea sp. MT58 around IAI47_07715

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,633,958	+		IAI47_07710	0.48	-3.0
1,633,959	-		IAI47_07710	0.48	+1.4
1,634,060	+		IAI47_07710	0.63	-0.7
1,634,100	+		IAI47_07710	0.70	+1.4
1,634,100	+		IAI47_07710	0.70	-1.0
1,634,100	+		IAI47_07710	0.70	-2.2
1,634,100	+		IAI47_07710	0.70	+1.1
1,634,100	+		IAI47_07710	0.70	-0.0
1,634,100	+		IAI47_07710	0.70	+0.3
1,634,100	+		IAI47_07710	0.70	-1.7
1,634,100	+		IAI47_07710	0.70	-0.3
1,634,100	+		IAI47_07710	0.70	-0.2
1,634,100	+		IAI47_07710	0.70	-1.7
1,634,101	-		IAI47_07710	0.70	-2.4
1,634,101	-		IAI47_07710	0.70	-1.7
1,634,101	-		IAI47_07710	0.70	+0.3
1,634,101	-		IAI47_07710	0.70	+0.8
1,634,101	-		IAI47_07710	0.70	+0.0
1,634,101	-		IAI47_07710	0.70	-0.2
1,634,101	-		IAI47_07710	0.70	-0.3
1,634,102	+		IAI47_07710	0.70	-0.3
1,634,107	+		IAI47_07710	0.71	+0.5
1,634,144	+		IAI47_07710	0.76	+1.3
1,634,144	+		IAI47_07710	0.76	+1.8
1,634,145	-		IAI47_07710	0.77	+1.0
1,634,145	-		IAI47_07710	0.77	+2.2
1,634,248	+				+0.8
1,634,248	+				+0.3
1,634,252	+				+1.4
1,634,252	+				-0.7
1,634,252	+				-0.1
1,634,252	+				+0.7
1,634,252	+				-0.8
1,634,253	-				-1.3
1,634,253	-				-1.3
1,634,433	+				+0.7
1,634,434	-				+0.2
1,634,490	+				-1.3
1,634,506	+				-1.1
1,634,506	+				+0.3
1,634,506	+				+0.8
1,634,507	-				+0.7
1,634,507	-				+0.3
1,634,513	-				-1.0
1,634,513	-				-0.9
1,634,565	+				+0.7
1,634,565	+				-0.4
1,634,566	-				-1.1
1,634,618	-				+0.4
1,634,627	+				-0.0
1,634,628	-				-1.5
1,634,632	-				-1.0
1,634,705	-				+2.9
1,634,750	+				+1.3
1,634,751	-				+0.6
1,634,792	-				+2.7
1,634,801	-				-2.0
1,634,827	-				-0.1
1,634,832	+				+1.3
1,634,832	+				+0.7
1,634,837	-				-0.6
1,634,864	+				-2.8
1,634,868	+				+1.5
1,634,869	-				-0.6
1,634,889	+				-1.9
1,634,890	-				-1.3
1,634,895	-				+0.7
1,634,979	+				-0.3
1,634,981	+				+0.4
1,634,981	+				+1.4
1,634,981	+				+1.0
1,634,981	+				+0.1
1,634,982	-				-1.2
1,634,982	-				-1.3
1,634,982	-				+0.0
1,634,982	-				-1.2
1,634,982	-				+0.5
1,634,982	-				+0.9
1,634,995	-				+0.3
1,635,016	-				+0.7
1,635,018	-				+0.7
1,635,018	-				+1.0
1,635,033	+				-0.1
1,635,033	+				-0.8
1,635,034	-				+2.1
1,635,034	-				-0.9
1,635,035	+				-0.7
1,635,035	+				-0.5
1,635,036	-				+1.3
1,635,036	-				+1.1
1,635,036	-				-3.3
1,635,036	-				+1.0
1,635,036	-				+2.3
1,635,075	+				-4.1
1,635,146	+		IAI47_07715	0.10	+0.1
1,635,147	-		IAI47_07715	0.10	-0.7
1,635,147	-		IAI47_07715	0.10	+1.3
1,635,147	-		IAI47_07715	0.10	-2.4
1,635,154	+		IAI47_07715	0.11	+1.8
1,635,154	+		IAI47_07715	0.11	+3.5
1,635,154	+		IAI47_07715	0.11	+1.7
1,635,155	-		IAI47_07715	0.11	+1.9
1,635,169	-		IAI47_07715	0.12	-1.0
1,635,235	+		IAI47_07715	0.15	-0.7
1,635,236	-		IAI47_07715	0.15	+0.5
1,635,236	-		IAI47_07715	0.15	+0.0
1,635,236	-		IAI47_07715	0.15	-2.9
1,635,279	+		IAI47_07715	0.17	+0.1
1,635,279	+		IAI47_07715	0.17	+0.3
1,635,295	+		IAI47_07715	0.18	-1.0
1,635,357	+		IAI47_07715	0.21	-1.9
1,635,357	+		IAI47_07715	0.21	+1.3
1,635,358	-		IAI47_07715	0.21	+1.0
1,635,412	+		IAI47_07715	0.24	+0.3
1,635,412	+		IAI47_07715	0.24	-2.4
1,635,412	+		IAI47_07715	0.24	-0.8
1,635,412	+		IAI47_07715	0.24	+1.5
1,635,412	+		IAI47_07715	0.24	+0.8
1,635,412	+		IAI47_07715	0.24	-0.7
1,635,412	+		IAI47_07715	0.24	+1.3
1,635,412	+		IAI47_07715	0.24	+0.1
1,635,412	+		IAI47_07715	0.24	-0.0
1,635,412	+		IAI47_07715	0.24	+2.4
1,635,412	+		IAI47_07715	0.24	-1.3
1,635,412	+		IAI47_07715	0.24	+0.1
1,635,412	+		IAI47_07715	0.24	+0.1
1,635,412	+		IAI47_07715	0.24	+1.6
1,635,412	+		IAI47_07715	0.24	-1.3
1,635,412	+		IAI47_07715	0.24	-0.7
1,635,412	+		IAI47_07715	0.24	+0.7
1,635,412	+		IAI47_07715	0.24	-2.3
1,635,413	-		IAI47_07715	0.24	+0.2
1,635,413	-		IAI47_07715	0.24	+0.5
1,635,413	-		IAI47_07715	0.24	+0.2
1,635,413	-		IAI47_07715	0.24	+0.1
1,635,413	-		IAI47_07715	0.24	+0.3
1,635,413	-		IAI47_07715	0.24	-0.0
1,635,413	-		IAI47_07715	0.24	-1.6
1,635,429	+		IAI47_07715	0.25	-0.7
1,635,429	+		IAI47_07715	0.25	+0.5
1,635,430	-		IAI47_07715	0.25	+1.2
1,635,478	+		IAI47_07715	0.28	-2.1
1,635,478	+		IAI47_07715	0.28	-2.5
1,635,478	+		IAI47_07715	0.28	-1.1
1,635,478	+		IAI47_07715	0.28	+0.9
1,635,478	+		IAI47_07715	0.28	-0.2
1,635,478	+		IAI47_07715	0.28	-0.1
1,635,570	+		IAI47_07715	0.32	-0.3
1,635,570	+		IAI47_07715	0.32	+0.4
1,635,570	+		IAI47_07715	0.32	+2.9
1,635,571	-		IAI47_07715	0.33	-0.6
1,635,571	-		IAI47_07715	0.33	+1.9
1,635,651	+		IAI47_07715	0.37	-0.5
1,635,651	+		IAI47_07715	0.37	-2.9
1,635,652	-		IAI47_07715	0.37	+1.9
1,635,655	+		IAI47_07715	0.37	+0.8
1,635,656	-		IAI47_07715	0.37	+1.3
1,635,656	-		IAI47_07715	0.37	-3.2
1,635,772	+		IAI47_07715	0.43	+0.3
1,635,773	-		IAI47_07715	0.43	+0.2
1,635,773	-		IAI47_07715	0.43	+1.3
1,635,780	+		IAI47_07715	0.43	+0.1
1,635,780	+		IAI47_07715	0.43	+1.3
1,635,781	-		IAI47_07715	0.44	-0.7
1,635,819	+		IAI47_07715	0.45	-0.8
1,635,903	+		IAI47_07715	0.50	+1.4
1,635,932	+		IAI47_07715	0.51	+0.4
1,635,933	-		IAI47_07715	0.51	+0.3
1,635,933	-		IAI47_07715	0.51	+0.3
1,635,946	-		IAI47_07715	0.52	-1.5
1,636,002	+		IAI47_07715	0.55	+0.6
1,636,003	-		IAI47_07715	0.55	-1.0
1,636,003	-		IAI47_07715	0.55	+0.7
1,636,003	-		IAI47_07715	0.55	+1.1
1,636,003	-		IAI47_07715	0.55	+1.1
1,636,074	+		IAI47_07715	0.59	+2.8
1,636,075	-		IAI47_07715	0.59	+0.1
1,636,075	-		IAI47_07715	0.59	-0.3
1,636,075	-		IAI47_07715	0.59	+0.0
1,636,145	+		IAI47_07715	0.62	-2.0
1,636,145	+		IAI47_07715	0.62	+1.1
1,636,146	-		IAI47_07715	0.63	-1.0
1,636,146	-		IAI47_07715	0.63	-1.7
1,636,215	+		IAI47_07715	0.66	+0.3
1,636,215	+		IAI47_07715	0.66	+2.0
1,636,215	+		IAI47_07715	0.66	-0.7
1,636,215	+		IAI47_07715	0.66	+1.1
1,636,215	+		IAI47_07715	0.66	+4.2
1,636,215	+		IAI47_07715	0.66	+0.6
1,636,216	-		IAI47_07715	0.66	+0.9
1,636,253	+		IAI47_07715	0.68	+2.5
1,636,271	+		IAI47_07715	0.69	+1.3
1,636,272	-		IAI47_07715	0.69	-2.5
1,636,338	+		IAI47_07715	0.73	+0.5
1,636,339	-		IAI47_07715	0.73	-0.7
1,636,460	+		IAI47_07715	0.79	-0.9
1,636,461	-		IAI47_07715	0.79	+2.3
1,636,461	-		IAI47_07715	0.79	+4.5
1,636,461	-		IAI47_07715	0.79	+0.6
1,636,461	-		IAI47_07715	0.79	+0.6
1,636,504	-		IAI47_07715	0.81	+0.6
1,636,504	-		IAI47_07715	0.81	-0.9
1,636,514	+		IAI47_07715	0.82	+0.1
1,636,542	+		IAI47_07715	0.83	+2.1
1,636,543	-		IAI47_07715	0.83	+0.6
1,636,565	+		IAI47_07715	0.84	+1.5
1,636,566	-		IAI47_07715	0.84	+0.5
1,636,566	-		IAI47_07715	0.84	-0.9
1,636,566	-		IAI47_07715	0.84	+0.6
1,636,654	-		IAI47_07715	0.89	-0.6
1,636,654	-		IAI47_07715	0.89	+0.3
1,636,656	+		IAI47_07715	0.89	+0.5
1,636,656	+		IAI47_07715	0.89	+0.8
1,636,656	+		IAI47_07715	0.89	+2.4
1,636,656	+		IAI47_07715	0.89	-1.2
1,636,656	+		IAI47_07715	0.89	-0.9
1,636,656	+		IAI47_07715	0.89	+1.3
1,636,657	-		IAI47_07715	0.89	+2.6
1,636,811	+				+0.5
1,636,811	+				+0.9
1,636,811	+				-0.6
1,636,811	+				+0.5
1,636,811	+				-0.7
1,636,811	+				-0.7
1,636,811	+				-1.7
1,636,811	+				-0.2
1,636,812	-				-2.2
1,636,812	-				-0.6
1,636,812	-				+0.2
1,636,812	-				+1.4
1,636,812	-				+1.9
1,636,823	+				+1.9
1,636,823	+				-2.2
1,636,934	+				-0.7
1,636,934	+				-0.2
1,636,935	-				-0.2
1,636,935	-				-2.8
1,636,935	-				+0.8
1,636,935	-				-0.5
1,636,951	+				+1.3
1,636,951	+				+0.7
1,636,952	-				-2.4
1,636,952	-				+1.4
1,636,952	-				+0.9
1,636,952	-				-1.5
1,636,952	-				-0.7
1,636,998	+		IAI47_07720	0.22	+4.3
1,636,999	-		IAI47_07720	0.22	-0.9
1,637,020	+		IAI47_07720	0.32	+0.5
1,637,021	-		IAI47_07720	0.33	-2.7
1,637,021	-		IAI47_07720	0.33	-1.5
1,637,063	+		IAI47_07720	0.53	-0.1
1,637,063	+		IAI47_07720	0.53	-1.4
1,637,063	+		IAI47_07720	0.53	+0.1
1,637,063	+		IAI47_07720	0.53	+0.3
1,637,063	+		IAI47_07720	0.53	-1.8
1,637,063	+		IAI47_07720	0.53	-0.7
1,637,063	+		IAI47_07720	0.53	-1.9
1,637,063	+		IAI47_07720	0.53	+0.6
1,637,063	+		IAI47_07720	0.53	-1.3
1,637,063	+		IAI47_07720	0.53	+3.0
1,637,063	+		IAI47_07720	0.53	-2.6
1,637,063	+		IAI47_07720	0.53	+1.6
1,637,064	-		IAI47_07720	0.54	+5.9
1,637,064	-		IAI47_07720	0.54	+0.7
1,637,064	-		IAI47_07720	0.54	+0.3
1,637,064	-		IAI47_07720	0.54	+0.6
1,637,064	-		IAI47_07720	0.54	+0.6
1,637,064	-		IAI47_07720	0.54	-2.7
1,637,064	-		IAI47_07720	0.54	+0.3
1,637,064	-		IAI47_07720	0.54	+1.6
1,637,075	+		IAI47_07720	0.59	+0.1
1,637,075	+		IAI47_07720	0.59	-0.1
1,637,075	+		IAI47_07720	0.59	+0.4
1,637,076	-		IAI47_07720	0.60	+1.5
1,637,076	-		IAI47_07720	0.60	-1.6
1,637,076	-		IAI47_07720	0.60	+0.6
1,637,076	-		IAI47_07720	0.60	+1.6
1,637,111	+		IAI47_07720	0.77	+2.6
1,637,111	+		IAI47_07720	0.77	-0.7
1,637,112	-		IAI47_07720	0.77	-1.5
1,637,138	-				-1.1
1,637,138	-				+2.0
1,637,173	+				-0.3
1,637,173	+				+0.3
1,637,173	+				+0.8
1,637,173	+				+0.6
1,637,173	+				+0.7
1,637,173	+				+1.7
1,637,173	+				+0.6
1,637,173	+				+0.3
1,637,173	+				+0.3
1,637,173	+				-1.3
1,637,173	+				+0.1
1,637,173	+				+0.7
1,637,174	-				-0.0
1,637,174	-				+1.8
1,637,174	-				-0.4
1,637,174	-				+0.8
1,637,174	-				+1.7
1,637,174	-				+1.4
1,637,174	-				+0.4
1,637,174	-				+2.3
1,637,174	-				-1.1
1,637,174	-				-0.9
1,637,250	+				-0.9
1,637,250	+				-1.4
1,637,250	+				-0.5
1,637,251	-				-1.0
1,637,251	-				+0.5
1,637,272	+				-1.3
1,637,273	-				-2.6
1,637,278	-				+0.8
1,637,278	-				+1.7
1,637,298	-				+1.4
1,637,298	-				+0.4
1,637,298	-				-2.2
1,637,395	+				+1.7
1,637,395	+				+1.5
1,637,396	-				-1.0
1,637,396	-				-0.3
1,637,396	-				-1.0
1,637,396	-				-2.3
1,637,403	-				+1.4
1,637,403	-				-0.0
1,637,449	-				-2.3
1,637,452	+				-0.1
1,637,462	+				+0.2
1,637,462	+				-1.2
1,637,462	+				-0.2
1,637,463	-				+0.9
1,637,542	-				+0.6
1,637,577	+				-0.7
1,637,578	-				-0.4
1,637,595	+				+3.0
1,637,595	+				+1.5
1,637,595	+				-2.4
1,637,595	+				+1.0
1,637,595	+				+1.9
1,637,596	-				+0.1
1,637,596	-				+0.5
1,637,596	-				-0.2
1,637,596	-				+0.3
1,637,596	-				+1.3
1,637,596	-				+2.8
1,637,692	+				-3.1
1,637,693	-				-2.9
1,637,697	+				+0.7
1,637,698	-				+0.5
1,637,716	+				+0.8
1,637,717	-				-0.3
1,637,733	-				-2.2
1,637,738	+				-1.7
1,637,738	+				+0.9
1,637,738	+				+0.0
1,637,739	-				+0.8
1,637,739	-				+0.1
1,637,765	+				+1.3
1,637,766	-				-1.0
1,637,766	-				-0.2
1,637,778	-				+0.1
1,637,789	+				-2.0
1,637,789	+				-1.2
1,637,801	-				+1.0
1,637,801	-				+0.1
1,637,801	-				+1.4
1,637,850	+				-0.3
1,637,851	-				-0.0
1,637,851	-				-0.6
1,637,862	+				+0.6
1,637,863	-				+0.4