Strain Fitness in Pantoea sp. MT58 around IAI47_07135

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,504,856	+		IAI47_07130	0.32	-0.5
1,504,856	+		IAI47_07130	0.32	-0.1
1,504,856	+		IAI47_07130	0.32	-0.0
1,504,950	+		IAI47_07130	0.39	-2.3
1,504,950	+		IAI47_07130	0.39	+0.9
1,504,950	+		IAI47_07130	0.39	-0.0
1,504,950	+		IAI47_07130	0.39	-0.5
1,504,950	+		IAI47_07130	0.39	-0.1
1,504,950	+		IAI47_07130	0.39	-0.4
1,504,950	+		IAI47_07130	0.39	+2.5
1,504,951	-		IAI47_07130	0.39	-1.6
1,504,951	-		IAI47_07130	0.39	+1.4
1,504,951	-		IAI47_07130	0.39	+0.0
1,504,951	-		IAI47_07130	0.39	-0.6
1,504,987	+		IAI47_07130	0.41	-2.1
1,505,050	+		IAI47_07130	0.46	+0.3
1,505,050	+		IAI47_07130	0.46	+2.4
1,505,050	+		IAI47_07130	0.46	+2.1
1,505,171	+		IAI47_07130	0.55	-2.1
1,505,172	-		IAI47_07130	0.55	+1.4
1,505,185	-		IAI47_07130	0.56	+1.2
1,505,185	-		IAI47_07130	0.56	-0.7
1,505,200	-		IAI47_07130	0.57	-0.4
1,505,361	+		IAI47_07130	0.69	+1.7
1,505,361	+		IAI47_07130	0.69	-0.3
1,505,361	+		IAI47_07130	0.69	+1.7
1,505,361	+		IAI47_07130	0.69	+0.3
1,505,361	+		IAI47_07130	0.69	+2.6
1,505,361	+		IAI47_07130	0.69	+1.4
1,505,361	+		IAI47_07130	0.69	+0.6
1,505,361	+		IAI47_07130	0.69	-1.0
1,505,361	+		IAI47_07130	0.69	+0.7
1,505,362	-		IAI47_07130	0.69	-1.1
1,505,362	-		IAI47_07130	0.69	-1.2
1,505,362	-		IAI47_07130	0.69	+1.3
1,505,362	-		IAI47_07130	0.69	-2.3
1,505,362	-		IAI47_07130	0.69	-0.1
1,505,365	+		IAI47_07130	0.69	-1.3
1,505,365	+		IAI47_07130	0.69	+2.0
1,505,365	+		IAI47_07130	0.69	+0.5
1,505,365	+		IAI47_07130	0.69	+1.4
1,505,366	-		IAI47_07130	0.69	-0.4
1,505,406	+		IAI47_07130	0.72	+1.6
1,505,427	-		IAI47_07130	0.74	-0.1
1,505,478	-		IAI47_07130	0.77	+0.1
1,505,511	-		IAI47_07130	0.80	-1.0
1,505,534	+		IAI47_07130	0.82	+0.4
1,505,535	-		IAI47_07130	0.82	+1.6
1,505,543	+		IAI47_07130	0.82	+0.8
1,505,586	-		IAI47_07130	0.85	+2.0
1,505,662	+				-0.2
1,505,662	+				+0.0
1,505,681	+				-0.8
1,505,681	+				-0.0
1,505,681	+				-2.3
1,505,681	+				+1.4
1,505,681	+				+1.0
1,505,682	-				+1.1
1,505,717	+				-0.2
1,505,717	+				-1.2
1,505,717	+				+0.4
1,505,721	+				-0.7
1,505,721	+				+1.8
1,505,781	+				+1.8
1,505,782	-				+1.8
1,505,782	-				+0.9
1,505,834	+				-0.2
1,505,835	-				-1.0
1,505,859	+				+0.0
1,505,859	+				-1.2
1,505,860	-				-0.3
1,505,860	-				+0.4
1,505,865	+				-1.8
1,505,865	+				-1.0
1,505,865	+				-0.6
1,505,866	-				-0.7
1,505,866	-				-0.7
1,505,869	+				-0.3
1,505,869	+				+4.2
1,505,869	+				-0.3
1,505,869	+				-0.2
1,505,869	+				-0.1
1,505,870	-				-1.0
1,505,870	-				+0.4
1,505,870	-				+2.3
1,505,870	-				-0.5
1,505,870	-				-1.3
1,505,870	-				-1.0
1,505,870	-				-1.2
1,505,870	-				+1.4
1,505,889	+				-0.4
1,505,889	+				+1.0
1,505,889	+				-0.3
1,505,889	+				+0.6
1,505,890	-				-0.4
1,505,890	-				-1.5
1,505,909	-				-0.3
1,505,910	+		IAI47_07135	0.10	+0.4
1,505,911	-		IAI47_07135	0.10	-1.4
1,505,911	-		IAI47_07135	0.10	-0.0
1,505,963	+		IAI47_07135	0.17	-1.2
1,506,033	+		IAI47_07135	0.26	+0.3
1,506,048	+		IAI47_07135	0.28	-1.2
1,506,084	+		IAI47_07135	0.33	-2.8
1,506,094	-		IAI47_07135	0.34	+1.6
1,506,094	-		IAI47_07135	0.34	-3.4
1,506,160	+		IAI47_07135	0.43	-1.6
1,506,161	-		IAI47_07135	0.43	-0.9
1,506,161	-		IAI47_07135	0.43	-1.3
1,506,161	-		IAI47_07135	0.43	-0.5
1,506,161	-		IAI47_07135	0.43	-1.8
1,506,161	-		IAI47_07135	0.43	+0.7
1,506,161	-		IAI47_07135	0.43	+0.6
1,506,222	+		IAI47_07135	0.51	+0.1
1,506,223	-		IAI47_07135	0.51	-0.2
1,506,281	-		IAI47_07135	0.59	-2.7
1,506,305	+		IAI47_07135	0.62	+0.7
1,506,305	+		IAI47_07135	0.62	-2.2
1,506,306	-		IAI47_07135	0.62	-1.8
1,506,306	-		IAI47_07135	0.62	-0.2
1,506,306	-		IAI47_07135	0.62	-0.6
1,506,306	-		IAI47_07135	0.62	-1.6
1,506,372	-		IAI47_07135	0.71	+0.0
1,506,428	-		IAI47_07135	0.78	+1.9
1,506,487	+		IAI47_07135	0.86	+2.0
1,506,487	+		IAI47_07135	0.86	-0.8
1,506,487	+		IAI47_07135	0.86	-1.8
1,506,488	-		IAI47_07135	0.86	-1.3
1,506,488	-		IAI47_07135	0.86	+0.5
1,506,488	-		IAI47_07135	0.86	-1.8
1,506,488	-		IAI47_07135	0.86	+0.7
1,506,488	-		IAI47_07135	0.86	+0.4
1,506,488	-		IAI47_07135	0.86	+1.9
1,506,488	-		IAI47_07135	0.86	+0.8
1,506,488	-		IAI47_07135	0.86	-1.0
1,506,594	+				+1.5
1,506,595	-				+0.8
1,506,612	+				+0.7
1,506,630	+				-0.6
1,506,635	+				-1.0
1,506,635	+				+1.0
1,506,636	-				+0.4
1,506,636	-				-1.5
1,506,682	+				-1.3
1,506,682	+				+0.5
1,506,682	+				+0.4
1,506,682	+				-2.1
1,506,683	-				+0.8
1,506,683	-				+1.0
1,506,683	-				-3.0
1,506,683	-				-0.3
1,506,683	-				-2.3
1,506,692	+				-0.2
1,506,692	+				-3.5
1,506,692	+				+1.1
1,506,693	-				+0.3
1,506,693	-				-1.9
1,506,702	+				+0.4
1,506,702	+				-1.4
1,506,703	-				+0.2
1,506,703	-				+0.4
1,506,703	-				-0.6
1,506,703	-				-0.0
1,506,703	-				-2.0
1,506,703	-				-2.5
1,506,703	-				+1.0
1,506,724	+				-0.1
1,506,724	+				-0.8
1,506,724	+				+1.0
1,506,735	-				+0.9
1,506,799	+				-2.0
1,506,799	+				+1.6
1,506,799	+				+3.7
1,506,799	+				+1.0
1,506,800	-				-1.8
1,506,800	-				+1.1
1,506,830	+				-2.7
1,506,875	+				+0.0
1,506,875	+				+0.3
1,506,875	+				+0.1
1,506,876	-				-1.4
1,506,893	-				-1.8
1,506,899	+				-0.0
1,506,900	-				+0.6
1,506,900	-				+0.0
1,506,900	-				+0.0
1,506,985	+		IAI47_07140	0.14	+1.1
1,506,985	+		IAI47_07140	0.14	-0.2
1,506,985	+		IAI47_07140	0.14	+2.2
1,506,985	+		IAI47_07140	0.14	+0.5
1,506,985	+		IAI47_07140	0.14	+1.0
1,506,985	+		IAI47_07140	0.14	-1.7
1,506,985	+		IAI47_07140	0.14	-0.6
1,506,985	+		IAI47_07140	0.14	+1.1
1,506,985	+		IAI47_07140	0.14	-1.0
1,506,985	+		IAI47_07140	0.14	+0.1
1,506,985	+		IAI47_07140	0.14	-1.8
1,506,986	-		IAI47_07140	0.14	-0.2
1,506,986	-		IAI47_07140	0.14	-1.2
1,506,986	-		IAI47_07140	0.14	-0.1
1,506,986	-		IAI47_07140	0.14	-1.2
1,506,986	-		IAI47_07140	0.14	-0.8
1,506,986	-		IAI47_07140	0.14	-0.1
1,506,986	-		IAI47_07140	0.14	-0.5
1,507,052	-		IAI47_07140	0.21	+0.0
1,507,305	+		IAI47_07140	0.49	+2.1
1,507,306	-		IAI47_07140	0.49	-0.5
1,507,306	-		IAI47_07140	0.49	+1.9
1,507,377	-		IAI47_07140	0.57	+0.7
1,507,388	+		IAI47_07140	0.58	+0.1
1,507,415	+		IAI47_07140	0.61	+1.4
1,507,416	-		IAI47_07140	0.61	-0.2
1,507,416	-		IAI47_07140	0.61	-0.7
1,507,479	+		IAI47_07140	0.68	-0.5
1,507,479	+		IAI47_07140	0.68	-1.5
1,507,479	+		IAI47_07140	0.68	-2.1
1,507,479	+		IAI47_07140	0.68	-0.8
1,507,479	+		IAI47_07140	0.68	+0.7
1,507,479	+		IAI47_07140	0.68	-1.6
1,507,479	+		IAI47_07140	0.68	-0.5
1,507,479	+		IAI47_07140	0.68	+2.9
1,507,479	+		IAI47_07140	0.68	-0.4
1,507,479	+		IAI47_07140	0.68	-0.3
1,507,479	+		IAI47_07140	0.68	+0.9
1,507,479	+		IAI47_07140	0.68	+0.5
1,507,479	+		IAI47_07140	0.68	+1.8
1,507,480	-		IAI47_07140	0.68	+1.9
1,507,480	-		IAI47_07140	0.68	-0.5
1,507,480	-		IAI47_07140	0.68	-1.4
1,507,480	-		IAI47_07140	0.68	+0.5
1,507,480	-		IAI47_07140	0.68	+0.7
1,507,480	-		IAI47_07140	0.68	+1.2
1,507,480	-		IAI47_07140	0.68	-1.0
1,507,480	-		IAI47_07140	0.68	-1.3
1,507,480	-		IAI47_07140	0.68	+1.5
1,507,480	-		IAI47_07140	0.68	-0.0
1,507,480	-		IAI47_07140	0.68	+1.8
1,507,480	-		IAI47_07140	0.68	-1.0
1,507,480	-		IAI47_07140	0.68	+2.0
1,507,529	+		IAI47_07140	0.74	+1.5
1,507,529	+		IAI47_07140	0.74	+1.2
1,507,529	+		IAI47_07140	0.74	+1.1
1,507,530	-		IAI47_07140	0.74	+0.8
1,507,530	-		IAI47_07140	0.74	+0.4
1,507,530	-		IAI47_07140	0.74	-0.4
1,507,530	-		IAI47_07140	0.74	+1.4
1,507,540	+		IAI47_07140	0.75	+0.4
1,507,540	+		IAI47_07140	0.75	+1.4
1,507,540	+		IAI47_07140	0.75	-0.2
1,507,540	+		IAI47_07140	0.75	+1.3
1,507,540	+		IAI47_07140	0.75	-1.5
1,507,541	-		IAI47_07140	0.75	-0.8
1,507,541	-		IAI47_07140	0.75	-0.5
1,507,541	-		IAI47_07140	0.75	+0.8
1,507,541	-		IAI47_07140	0.75	-0.4
1,507,541	-		IAI47_07140	0.75	+0.0
1,507,541	-		IAI47_07140	0.75	-1.0
1,507,541	-		IAI47_07140	0.75	-0.4
1,507,541	-		IAI47_07140	0.75	+0.4
1,507,541	-		IAI47_07140	0.75	+0.1
1,507,543	+		IAI47_07140	0.75	+1.9
1,507,543	+		IAI47_07140	0.75	+0.6
1,507,543	+		IAI47_07140	0.75	-0.6
1,507,544	-		IAI47_07140	0.75	-0.4
1,507,555	-		IAI47_07140	0.77	-0.8
1,507,555	-		IAI47_07140	0.77	+0.7
1,507,555	-		IAI47_07140	0.77	-0.2
1,507,555	-		IAI47_07140	0.77	-0.4
1,507,577	+		IAI47_07140	0.79	-1.1